miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33554 3' -61.6 NC_007605.1 + 61686 0.66 0.726862
Target:  5'- aUGGCG-UAGuCCCCCGCCaCGGUc-- -3'
miRNA:   3'- cGCCGCaGUC-GGGGGCGGcGUCAacg -5'
33554 3' -61.6 NC_007605.1 + 73788 0.66 0.726862
Target:  5'- cGCGGaucUCucGCgagUCCCGCCGCAGUuucucgugUGCa -3'
miRNA:   3'- -CGCCgc-AGu-CG---GGGGCGGCGUCA--------ACG- -5'
33554 3' -61.6 NC_007605.1 + 59946 0.66 0.717428
Target:  5'- uGgGGUGUCuGCUCCCcccugcggaaGCCGCcuGGgUGCg -3'
miRNA:   3'- -CgCCGCAGuCGGGGG----------CGGCG--UCaACG- -5'
33554 3' -61.6 NC_007605.1 + 87770 0.66 0.717428
Target:  5'- uGCcGCGg-GGCCuCCUGCCGCGGggccuccUGCc -3'
miRNA:   3'- -CGcCGCagUCGG-GGGCGGCGUCa------ACG- -5'
33554 3' -61.6 NC_007605.1 + 61398 0.66 0.707927
Target:  5'- aCGGCGUCccaagGGUCCgCCGCCGCc----- -3'
miRNA:   3'- cGCCGCAG-----UCGGG-GGCGGCGucaacg -5'
33554 3' -61.6 NC_007605.1 + 55675 0.66 0.707927
Target:  5'- cGCGGUGUCGGCCagCgGUgGCguggcuucggGGUUGUc -3'
miRNA:   3'- -CGCCGCAGUCGGg-GgCGgCG----------UCAACG- -5'
33554 3' -61.6 NC_007605.1 + 62281 0.66 0.706973
Target:  5'- cGCGuuaaaaGCGUagaaugaCAGCCCCUcCCGCGGgaagGCg -3'
miRNA:   3'- -CGC------CGCA-------GUCGGGGGcGGCGUCaa--CG- -5'
33554 3' -61.6 NC_007605.1 + 71374 0.66 0.698368
Target:  5'- cGUGGCGgagcuuggugcUguGCCCCUGCC-CGGgcGUa -3'
miRNA:   3'- -CGCCGC-----------AguCGGGGGCGGcGUCaaCG- -5'
33554 3' -61.6 NC_007605.1 + 101627 0.66 0.688758
Target:  5'- cGCuGGUGcucuugcCAGCCCCCGCCGUucccGUa -3'
miRNA:   3'- -CG-CCGCa------GUCGGGGGCGGCGucaaCG- -5'
33554 3' -61.6 NC_007605.1 + 18895 0.66 0.687795
Target:  5'- ---uCGUCAGCCgCUucagacaGCCGCGGUUGUc -3'
miRNA:   3'- cgccGCAGUCGGgGG-------CGGCGUCAACG- -5'
33554 3' -61.6 NC_007605.1 + 131656 0.66 0.679106
Target:  5'- gGgGGCGUCccgggaccccAGCCCCCaGCCgGCAauccagGCg -3'
miRNA:   3'- -CgCCGCAG----------UCGGGGG-CGG-CGUcaa---CG- -5'
33554 3' -61.6 NC_007605.1 + 62185 0.66 0.679106
Target:  5'- cGCGGcCGUgGGCugaCCCUGCCcuGCAGccGCc -3'
miRNA:   3'- -CGCC-GCAgUCG---GGGGCGG--CGUCaaCG- -5'
33554 3' -61.6 NC_007605.1 + 127959 0.67 0.669419
Target:  5'- -gGGCaau-GCCCCCGCCGCgcaGGUcaGCa -3'
miRNA:   3'- cgCCGcaguCGGGGGCGGCG---UCAa-CG- -5'
33554 3' -61.6 NC_007605.1 + 123423 0.67 0.669419
Target:  5'- gGgGGUG-CAGCUCCaGCCGCAGcagGUc -3'
miRNA:   3'- -CgCCGCaGUCGGGGgCGGCGUCaa-CG- -5'
33554 3' -61.6 NC_007605.1 + 54330 0.67 0.669419
Target:  5'- cCGGC--CAGCCCCCGCuCGUacuccgcguaGGggGCc -3'
miRNA:   3'- cGCCGcaGUCGGGGGCG-GCG----------UCaaCG- -5'
33554 3' -61.6 NC_007605.1 + 34469 0.67 0.669419
Target:  5'- cGCGGUGgUGGCCCUCGgUGguGggcUGCu -3'
miRNA:   3'- -CGCCGCaGUCGGGGGCgGCguCa--ACG- -5'
33554 3' -61.6 NC_007605.1 + 134560 0.67 0.663593
Target:  5'- aCGGCGUCGguguugcccuggggcGCCCCuCGCC-CAuGcUUGCg -3'
miRNA:   3'- cGCCGCAGU---------------CGGGG-GCGGcGU-C-AACG- -5'
33554 3' -61.6 NC_007605.1 + 60569 0.67 0.658731
Target:  5'- aGCGGCGgguggccaGGCCCaacgacuCCGCCGUcg-UGCu -3'
miRNA:   3'- -CGCCGCag------UCGGG-------GGCGGCGucaACG- -5'
33554 3' -61.6 NC_007605.1 + 61754 0.67 0.653865
Target:  5'- gGCGGCuGgagagaaggaugccCGGCuCCCCGCCGCcuccUGCa -3'
miRNA:   3'- -CGCCG-Ca-------------GUCG-GGGGCGGCGuca-ACG- -5'
33554 3' -61.6 NC_007605.1 + 109824 0.67 0.649969
Target:  5'- gGCGGCagagauggaGGCCCUgGCCGCucgugUGCa -3'
miRNA:   3'- -CGCCGcag------UCGGGGgCGGCGuca--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.