miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33554 5' -50.3 NC_007605.1 + 166505 0.66 0.998522
Target:  5'- aCGCGuuUCUGcGGAUcagucgcugGCUGGUGGGCa -3'
miRNA:   3'- gGCGC--AGACaUCUAua-------UGACUGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 58646 0.66 0.998522
Target:  5'- cCCGCGUagaUGUcgcAGAUGUAgaggaUGAacUGGGCc -3'
miRNA:   3'- -GGCGCAg--ACA---UCUAUAUg----ACU--GCCCG- -5'
33554 5' -50.3 NC_007605.1 + 157455 0.66 0.998522
Target:  5'- gCCGCGgauggggCUGggggcGAUGgacUGCUGGgGGGUg -3'
miRNA:   3'- -GGCGCa------GACau---CUAU---AUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 158990 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 146714 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 143646 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 140577 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 137508 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 155921 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 149783 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 152852 0.66 0.998228
Target:  5'- -gGgGUCUGUcuGGGgg-GCUGA-GGGCg -3'
miRNA:   3'- ggCgCAGACA--UCUauaUGACUgCCCG- -5'
33554 5' -50.3 NC_007605.1 + 170123 0.67 0.996508
Target:  5'- uCCGCGggCUccGGGg--GCUG-CGGGCg -3'
miRNA:   3'- -GGCGCa-GAcaUCUauaUGACuGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 171183 0.67 0.996508
Target:  5'- uCCGCGggCUccGGGg--GCUG-CGGGCg -3'
miRNA:   3'- -GGCGCa-GAcaUCUauaUGACuGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 169586 0.67 0.996508
Target:  5'- uCCGCGggCUccGGGg--GCUG-CGGGCg -3'
miRNA:   3'- -GGCGCa-GAcaUCUauaUGACuGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 153865 0.67 0.996451
Target:  5'- uCCGUGUCcccGUAGAUGacucgaaGCUGGCccucgggguugagGGGCg -3'
miRNA:   3'- -GGCGCAGa--CAUCUAUa------UGACUG-------------CCCG- -5'
33554 5' -50.3 NC_007605.1 + 111502 0.67 0.99591
Target:  5'- aCGCc-CUGgagcugGGAUAcagcCUGACGGGCg -3'
miRNA:   3'- gGCGcaGACa-----UCUAUau--GACUGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 95355 0.68 0.992632
Target:  5'- gCCGCGUUUGUGGG---ACUGgaaGCGccGGCc -3'
miRNA:   3'- -GGCGCAGACAUCUauaUGAC---UGC--CCG- -5'
33554 5' -50.3 NC_007605.1 + 153454 0.68 0.991201
Target:  5'- cCUGCcuucacggagGUCUGUguaggccugguuuaGGAUGUcaaUGACGGGCa -3'
miRNA:   3'- -GGCG----------CAGACA--------------UCUAUAug-ACUGCCCG- -5'
33554 5' -50.3 NC_007605.1 + 98515 0.68 0.990345
Target:  5'- -aGCGUgcGUGuuUAUGCUGugGGGUg -3'
miRNA:   3'- ggCGCAgaCAUcuAUAUGACugCCCG- -5'
33554 5' -50.3 NC_007605.1 + 123626 0.69 0.984132
Target:  5'- gCCGCGUugaggCUGUuuaGGGUAUG--GGCGGGUg -3'
miRNA:   3'- -GGCGCA-----GACA---UCUAUAUgaCUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.