miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33559 3' -48.3 NC_007605.1 + 128569 0.66 0.999778
Target:  5'- ---gGC-UGcAGUAUAGGCUCuCACCCg -3'
miRNA:   3'- guaaUGcAUcUCGUAUCUGAG-GUGGG- -5'
33559 3' -48.3 NC_007605.1 + 86004 0.66 0.999778
Target:  5'- -----gGUGGgaGGCAUAGGCcCCACUCc -3'
miRNA:   3'- guaaugCAUC--UCGUAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 43994 0.66 0.999778
Target:  5'- aGUUGCGaGGAgGCuuuaauguUGGACUCagGCCCg -3'
miRNA:   3'- gUAAUGCaUCU-CGu-------AUCUGAGg-UGGG- -5'
33559 3' -48.3 NC_007605.1 + 139392 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 142461 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 148599 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 157805 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 145530 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 154736 0.66 0.999717
Target:  5'- aCAgggGCGggagGGGGC-UGGGCcUCACCCu -3'
miRNA:   3'- -GUaa-UGCa---UCUCGuAUCUGaGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 170524 0.66 0.999717
Target:  5'- ----cCGUGGGGCAUGGGgggCCGCgCa -3'
miRNA:   3'- guaauGCAUCUCGUAUCUga-GGUGgG- -5'
33559 3' -48.3 NC_007605.1 + 166625 0.66 0.999643
Target:  5'- ---gGCGgagAGuAGCGUAGAaUCCAgCCa -3'
miRNA:   3'- guaaUGCa--UC-UCGUAUCUgAGGUgGG- -5'
33559 3' -48.3 NC_007605.1 + 18631 0.66 0.999643
Target:  5'- ---aGCGgcgAGAGC--AGACUCCGaauaucCCCa -3'
miRNA:   3'- guaaUGCa--UCUCGuaUCUGAGGU------GGG- -5'
33559 3' -48.3 NC_007605.1 + 5161 0.66 0.999643
Target:  5'- ----cCGUGGGGUcaacAGAUaaUCCACCCg -3'
miRNA:   3'- guaauGCAUCUCGua--UCUG--AGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 80451 0.66 0.999643
Target:  5'- --aUAUGUGGA-CAgaUGGACcugagCCACCCg -3'
miRNA:   3'- guaAUGCAUCUcGU--AUCUGa----GGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 34839 0.66 0.999551
Target:  5'- -cUUGCgGUAGAGgGUGGcgucCUCC-CCCg -3'
miRNA:   3'- guAAUG-CAUCUCgUAUCu---GAGGuGGG- -5'
33559 3' -48.3 NC_007605.1 + 171608 0.66 0.999551
Target:  5'- ---gGCG-GGGGCAUgggggggucGGAUUUCGCCCu -3'
miRNA:   3'- guaaUGCaUCUCGUA---------UCUGAGGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 76602 0.66 0.99944
Target:  5'- uGUUGacauGAGCAUGGAagacauggCCGCCCg -3'
miRNA:   3'- gUAAUgcauCUCGUAUCUga------GGUGGG- -5'
33559 3' -48.3 NC_007605.1 + 114383 0.66 0.99944
Target:  5'- ---gGCGUAGAgGCAUc-GCUCagCACCCa -3'
miRNA:   3'- guaaUGCAUCU-CGUAucUGAG--GUGGG- -5'
33559 3' -48.3 NC_007605.1 + 55173 0.66 0.99944
Target:  5'- gCGUUugGgAGAGCu--GAUUCUgcaGCCCa -3'
miRNA:   3'- -GUAAugCaUCUCGuauCUGAGG---UGGG- -5'
33559 3' -48.3 NC_007605.1 + 159684 0.66 0.999428
Target:  5'- ---cGCGUcgcccgaGGAGCuGUAGACcCCGCCg -3'
miRNA:   3'- guaaUGCA-------UCUCG-UAUCUGaGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.