miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33570 5' -58.6 NC_007605.1 + 155571 0.66 0.84575
Target:  5'- gUGACcuucUCCACcgagaCCCGGCaggGGGUCCu -3'
miRNA:   3'- gACUGua--AGGUG-----GGGCCGg--UCCAGGu -5'
33570 5' -58.6 NC_007605.1 + 138580 0.66 0.84575
Target:  5'- --aAUAUUCUAccucCCCCGGCCuGGUgCAa -3'
miRNA:   3'- gacUGUAAGGU----GGGGCCGGuCCAgGU- -5'
33570 5' -58.6 NC_007605.1 + 104031 0.66 0.837822
Target:  5'- -gGACGcugcugUCCACCCUGGUCAaGUaCCAc -3'
miRNA:   3'- gaCUGUa-----AGGUGGGGCCGGUcCA-GGU- -5'
33570 5' -58.6 NC_007605.1 + 108270 0.66 0.837822
Target:  5'- ---cCAgUCCACagccaCCGGCCAaGGUCCu -3'
miRNA:   3'- gacuGUaAGGUGg----GGCCGGU-CCAGGu -5'
33570 5' -58.6 NC_007605.1 + 19151 0.66 0.832979
Target:  5'- uCUGACcagcaagaugcucUCCACCauGGCCcccGGGUCCAc -3'
miRNA:   3'- -GACUGua-----------AGGUGGggCCGG---UCCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 98719 0.66 0.829715
Target:  5'- aCUGcgccuCAUgcgCCGCCUgGGuCCAGuGUCCAg -3'
miRNA:   3'- -GACu----GUAa--GGUGGGgCC-GGUC-CAGGU- -5'
33570 5' -58.6 NC_007605.1 + 132383 0.66 0.829715
Target:  5'- cCUGACAUUUUcgccaGCCgCCGGgCGGG-CCGg -3'
miRNA:   3'- -GACUGUAAGG-----UGG-GGCCgGUCCaGGU- -5'
33570 5' -58.6 NC_007605.1 + 106900 0.66 0.821436
Target:  5'- gCUGAUGUguuucCCAUCCUGGCCAGcccCCGu -3'
miRNA:   3'- -GACUGUAa----GGUGGGGCCGGUCca-GGU- -5'
33570 5' -58.6 NC_007605.1 + 57414 0.66 0.821436
Target:  5'- aUGGaacccuagCCACCgUGGCCAGGcCCGa -3'
miRNA:   3'- gACUguaa----GGUGGgGCCGGUCCaGGU- -5'
33570 5' -58.6 NC_007605.1 + 52836 0.66 0.821436
Target:  5'- -cGGCGUuggacUCCACgUCgGGCCAGGUgucCCAg -3'
miRNA:   3'- gaCUGUA-----AGGUG-GGgCCGGUCCA---GGU- -5'
33570 5' -58.6 NC_007605.1 + 37636 0.66 0.812993
Target:  5'- -cGACccgCCGCCCCGGgCAcGUUCAg -3'
miRNA:   3'- gaCUGuaaGGUGGGGCCgGUcCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 54049 0.66 0.812993
Target:  5'- -gGACcucggCCGCCUCGGCCucGGUCa- -3'
miRNA:   3'- gaCUGuaa--GGUGGGGCCGGu-CCAGgu -5'
33570 5' -58.6 NC_007605.1 + 53397 0.66 0.812993
Target:  5'- cCUGGCAgccUCCACCacgaucuugagCUGGCgCGGGUCg- -3'
miRNA:   3'- -GACUGUa--AGGUGG-----------GGCCG-GUCCAGgu -5'
33570 5' -58.6 NC_007605.1 + 119310 0.66 0.804394
Target:  5'- uCUGGCcg--CACCCCgaguucuugGGCCuGGUCCAc -3'
miRNA:   3'- -GACUGuaagGUGGGG---------CCGGuCCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 45537 0.66 0.804394
Target:  5'- -gGGCca-CCAgucUCCgGGCCGGGUCCGg -3'
miRNA:   3'- gaCUGuaaGGU---GGGgCCGGUCCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 28467 0.67 0.777734
Target:  5'- -cGGgGUcCCugCCUGGCaccaGGGUCCGg -3'
miRNA:   3'- gaCUgUAaGGugGGGCCGg---UCCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 95384 0.67 0.777734
Target:  5'- -cGGCAg--CACCCCGGUCAGaagCCAg -3'
miRNA:   3'- gaCUGUaagGUGGGGCCGGUCca-GGU- -5'
33570 5' -58.6 NC_007605.1 + 131282 0.67 0.777734
Target:  5'- -cGGgGUcCCugCCUGGCaccaGGGUCCGg -3'
miRNA:   3'- gaCUgUAaGGugGGGCCGg---UCCAGGU- -5'
33570 5' -58.6 NC_007605.1 + 25877 0.67 0.776825
Target:  5'- -gGACAggcccucugUCCACCCgGGCCAuccccgccccccuGuGUCCAc -3'
miRNA:   3'- gaCUGUa--------AGGUGGGgCCGGU-------------C-CAGGU- -5'
33570 5' -58.6 NC_007605.1 + 22808 0.67 0.776825
Target:  5'- -gGACAggcccucugUCCACCCgGGCCAuccccgccccccuGuGUCCAc -3'
miRNA:   3'- gaCUGUa--------AGGUGGGgCCGGU-------------C-CAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.