miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 130927 0.66 0.929823
Target:  5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3'
miRNA:   3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5'
33571 3' -55.5 NC_007605.1 + 28111 0.66 0.929823
Target:  5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3'
miRNA:   3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5'
33571 3' -55.5 NC_007605.1 + 75524 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 111387 0.66 0.924477
Target:  5'- cGCCUCCUGgugccggccCUCAGGGAGAgCCggggcaUCGCg -3'
miRNA:   3'- -UGGAGGAC---------GAGUUUCUCU-GGag----GGUG- -5'
33571 3' -55.5 NC_007605.1 + 75605 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75242 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 59249 0.66 0.919459
Target:  5'- aGCUUCCUGCUCGuguccaauauCCUCCCcCa -3'
miRNA:   3'- -UGGAGGACGAGUuucucu----GGAGGGuG- -5'
33571 3' -55.5 NC_007605.1 + 75293 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75191 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 8357 0.66 0.913059
Target:  5'- cACCcgCCaUGCU---GGAGGCCUCgCACg -3'
miRNA:   3'- -UGGa-GG-ACGAguuUCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 75167 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75215 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 56619 0.66 0.909445
Target:  5'- gGCCUCCagcuuugcggccaggUGCUUAuGGAacUCUCCCGCu -3'
miRNA:   3'- -UGGAGG---------------ACGAGUuUCUcuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 67518 0.66 0.906988
Target:  5'- -gCUCCUugugcaGCUUAAAGAGACUcaggcccucaUUCCACg -3'
miRNA:   3'- ugGAGGA------CGAGUUUCUCUGG----------AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 79548 0.66 0.905745
Target:  5'- gGCCUCCUaCUCcagccacgccggacaGAGGAGcuacgugagcggcguGCUUCCCGCg -3'
miRNA:   3'- -UGGAGGAcGAG---------------UUUCUC---------------UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 61787 0.67 0.900679
Target:  5'- cGCCUCCUGCaCAcGAGcggccaGGGCCUCCa-- -3'
miRNA:   3'- -UGGAGGACGaGU-UUC------UCUGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 56821 0.67 0.900679
Target:  5'- aGCC-CCUGCUCGAGGAccaCUgUCACa -3'
miRNA:   3'- -UGGaGGACGAGUUUCUcugGAgGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75422 0.67 0.900679
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 68370 0.67 0.893466
Target:  5'- gGCCggCCUGCUgAcgucagcGGGGGACCUgCCGu -3'
miRNA:   3'- -UGGa-GGACGAgU-------UUCUCUGGAgGGUg -5'
33571 3' -55.5 NC_007605.1 + 86364 0.67 0.887356
Target:  5'- uGCCUCUaacuggGUUCAuGGGGGCCaucuaaggCCCACg -3'
miRNA:   3'- -UGGAGGa-----CGAGUuUCUCUGGa-------GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.