Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 3' | -55.5 | NC_007605.1 | + | 86364 | 0.67 | 0.887356 |
Target: 5'- uGCCUCUaacuggGUUCAuGGGGGCCaucuaaggCCCACg -3' miRNA: 3'- -UGGAGGa-----CGAGUuUCUCUGGa-------GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 68370 | 0.67 | 0.893466 |
Target: 5'- gGCCggCCUGCUgAcgucagcGGGGGACCUgCCGu -3' miRNA: 3'- -UGGa-GGACGAgU-------UUCUCUGGAgGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 61787 | 0.67 | 0.900679 |
Target: 5'- cGCCUCCUGCaCAcGAGcggccaGGGCCUCCa-- -3' miRNA: 3'- -UGGAGGACGaGU-UUC------UCUGGAGGgug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 56821 | 0.67 | 0.900679 |
Target: 5'- aGCC-CCUGCUCGAGGAccaCUgUCACa -3' miRNA: 3'- -UGGaGGACGAGUUUCUcugGAgGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 22723 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 13516 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 159526 | 0.67 | 0.86567 |
Target: 5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3' miRNA: 3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 156086 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 146879 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 137673 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 143810 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 149948 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 153017 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 159155 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 107649 | 0.67 | 0.883179 |
Target: 5'- uCCUCCUGUUUccucccguuaagucuAGAGAaucACCUCCCAg -3' miRNA: 3'- uGGAGGACGAG---------------UUUCUc--UGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75341 | 0.67 | 0.887356 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 140741 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75422 | 0.67 | 0.900679 |
Target: 5'- uCCUCCUGCUCcugcc--CCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75371 | 0.67 | 0.887356 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 60426 | 0.68 | 0.846934 |
Target: 5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3' miRNA: 3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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