Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 3' | -55.5 | NC_007605.1 | + | 21686 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 18617 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 15548 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 12479 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 30893 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 33961 | 0.7 | 0.742314 |
Target: 5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3' miRNA: 3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 123575 | 0.7 | 0.752055 |
Target: 5'- gGCCUCCUGUguugCAGGGAGuaggucucgcGCCugUCUCGCg -3' miRNA: 3'- -UGGAGGACGa---GUUUCUC----------UGG--AGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 55510 | 0.7 | 0.76169 |
Target: 5'- uGCCUgaugCUGUUUAGGGGGGCCUCCUcCg -3' miRNA: 3'- -UGGAg---GACGAGUUUCUCUGGAGGGuG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75109 | 0.7 | 0.752055 |
Target: 5'- cACCUCCUGCUCcugcc--CCUCCUGCu -3' miRNA: 3'- -UGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 65821 | 0.7 | 0.752055 |
Target: 5'- uGCCUCCUGCUacgccaaccaCAGAGGcACCaagCCCAUc -3' miRNA: 3'- -UGGAGGACGA----------GUUUCUcUGGa--GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 133707 | 0.71 | 0.702465 |
Target: 5'- gGCCUaCCUGCUacucCAGGGGGG-CUCUCACa -3' miRNA: 3'- -UGGA-GGACGA----GUUUCUCUgGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 114282 | 0.71 | 0.682143 |
Target: 5'- uCCUCCUGCUCAGc---AgCUCCCACc -3' miRNA: 3'- uGGAGGACGAGUUucucUgGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 126542 | 0.72 | 0.641066 |
Target: 5'- uGCUUCCUGC-CuguGGAGGCUauuuaUCCCGCg -3' miRNA: 3'- -UGGAGGACGaGuu-UCUCUGG-----AGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75782 | 0.72 | 0.620451 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCCGCu -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 111264 | 0.73 | 0.589614 |
Target: 5'- -gCUCCUGCUCAcGGAGcuCCUccaCCCGCu -3' miRNA: 3'- ugGAGGACGAGUuUCUCu-GGA---GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 157413 | 0.74 | 0.509232 |
Target: 5'- cGCCUCCgacGcCUCAGaacggcggcgGGGGugCUCCCGCg -3' miRNA: 3'- -UGGAGGa--C-GAGUU----------UCUCugGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 87808 | 0.77 | 0.381712 |
Target: 5'- gGCCUCCUGCcgCGGGGcuccugccgcgGGGCCUCCUGCc -3' miRNA: 3'- -UGGAGGACGa-GUUUC-----------UCUGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 87778 | 0.78 | 0.341599 |
Target: 5'- gGCCUCCUGC-CGc-GGGGCCUCCUGCc -3' miRNA: 3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 87748 | 0.79 | 0.270795 |
Target: 5'- gGCCUCCUGC-CGu-GGGGCCUCCUGCc -3' miRNA: 3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 116674 | 1.08 | 0.003461 |
Target: 5'- gACCUCCUGCUCAAAGAGACCUCCCACc -3' miRNA: 3'- -UGGAGGACGAGUUUCUCUGGAGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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