Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 3' | -55.5 | NC_007605.1 | + | 28861 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 25792 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 19654 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 16585 | 0.67 | 0.88035 |
Target: 5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3' miRNA: 3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 159526 | 0.67 | 0.86567 |
Target: 5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3' miRNA: 3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 59249 | 0.66 | 0.919459 |
Target: 5'- aGCUUCCUGCUCGuguccaauauCCUCCCcCa -3' miRNA: 3'- -UGGAGGACGAGUuucucu----GGAGGGuG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75242 | 0.66 | 0.924477 |
Target: 5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75524 | 0.66 | 0.924477 |
Target: 5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75605 | 0.66 | 0.924477 |
Target: 5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 111387 | 0.66 | 0.924477 |
Target: 5'- cGCCUCCUGgugccggccCUCAGGGAGAgCCggggcaUCGCg -3' miRNA: 3'- -UGGAGGAC---------GAGUUUCUCU-GGag----GGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 28111 | 0.66 | 0.929823 |
Target: 5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3' miRNA: 3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75293 | 0.66 | 0.913059 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75215 | 0.66 | 0.913059 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75191 | 0.66 | 0.913059 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75167 | 0.66 | 0.913059 |
Target: 5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3' miRNA: 3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 8357 | 0.66 | 0.913059 |
Target: 5'- cACCcgCCaUGCU---GGAGGCCUCgCACg -3' miRNA: 3'- -UGGa-GG-ACGAguuUCUCUGGAGgGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 67518 | 0.66 | 0.906988 |
Target: 5'- -gCUCCUugugcaGCUUAAAGAGACUcaggcccucaUUCCACg -3' miRNA: 3'- ugGAGGA------CGAGUUUCUCUGG----------AGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 79548 | 0.66 | 0.905745 |
Target: 5'- gGCCUCCUaCUCcagccacgccggacaGAGGAGcuacgugagcggcguGCUUCCCGCg -3' miRNA: 3'- -UGGAGGAcGAG---------------UUUCUC---------------UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 56619 | 0.66 | 0.909445 |
Target: 5'- gGCCUCCagcuuugcggccaggUGCUUAuGGAacUCUCCCGCu -3' miRNA: 3'- -UGGAGG---------------ACGAGUuUCUcuGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 130927 | 0.66 | 0.929823 |
Target: 5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3' miRNA: 3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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