miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 108279 0.7 0.752055
Target:  5'- aGCCaCCgGC-CAAGGuccuGGGCCUCCCACc -3'
miRNA:   3'- -UGGaGGaCGaGUUUC----UCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 123575 0.7 0.752055
Target:  5'- gGCCUCCUGUguugCAGGGAGuaggucucgcGCCugUCUCGCg -3'
miRNA:   3'- -UGGAGGACGa---GUUUCUC----------UGG--AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 55510 0.7 0.76169
Target:  5'- uGCCUgaugCUGUUUAGGGGGGCCUCCUcCg -3'
miRNA:   3'- -UGGAg---GACGAGUUUCUCUGGAGGGuG- -5'
33571 3' -55.5 NC_007605.1 + 16602 0.69 0.780599
Target:  5'- cGCCUUCUuccaGCUCAucAGAGACCUCa-GCg -3'
miRNA:   3'- -UGGAGGA----CGAGUu-UCUCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 4086 0.69 0.780599
Target:  5'- gGCCUCCUGC-Ccc-GAGACCggcucgUCCGCc -3'
miRNA:   3'- -UGGAGGACGaGuuuCUCUGGa-----GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87882 0.69 0.780599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 116193 0.69 0.780599
Target:  5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3'
miRNA:   3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 19531 0.69 0.807929
Target:  5'- cCCUagcaUUGUUCAgccgaacgcccAAGAGaACCUCCCACa -3'
miRNA:   3'- uGGAg---GACGAGU-----------UUCUC-UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 150584 0.69 0.807929
Target:  5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3'
miRNA:   3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 9831 0.69 0.807929
Target:  5'- aACCUUUUGCUCAAGGAG-UCUCUg-- -3'
miRNA:   3'- -UGGAGGACGAGUUUCUCuGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 7041 0.69 0.807929
Target:  5'- uCCUCUgccgGCUCAucaAGGCCUCCCu- -3'
miRNA:   3'- uGGAGGa---CGAGUuucUCUGGAGGGug -5'
33571 3' -55.5 NC_007605.1 + 144391 0.68 0.825355
Target:  5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3'
miRNA:   3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5'
33571 3' -55.5 NC_007605.1 + 75470 0.68 0.828757
Target:  5'- cCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 3628 0.68 0.841251
Target:  5'- cACCaCCUGCUCGuGAGuggagccggcgacGGACC-CCCACu -3'
miRNA:   3'- -UGGaGGACGAGU-UUC-------------UCUGGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 79396 0.68 0.842069
Target:  5'- gGCCUCCUaaGCUCcAAGuucaAGGCCUUuuGCa -3'
miRNA:   3'- -UGGAGGA--CGAGuUUC----UCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 75686 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75632 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75551 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75749 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 60426 0.68 0.846934
Target:  5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3'
miRNA:   3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.