Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33571 | 3' | -55.5 | NC_007605.1 | + | 60426 | 0.68 | 0.846934 |
Target: 5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3' miRNA: 3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75551 | 0.68 | 0.84532 |
Target: 5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75632 | 0.68 | 0.84532 |
Target: 5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75686 | 0.68 | 0.84532 |
Target: 5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75749 | 0.68 | 0.84532 |
Target: 5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 79396 | 0.68 | 0.842069 |
Target: 5'- gGCCUCCUaaGCUCcAAGuucaAGGCCUUuuGCa -3' miRNA: 3'- -UGGAGGA--CGAGuUUC----UCUGGAGggUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 3628 | 0.68 | 0.841251 |
Target: 5'- cACCaCCUGCUCGuGAGuggagccggcgacGGACC-CCCACu -3' miRNA: 3'- -UGGaGGACGAGU-UUC-------------UCUGGaGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 75470 | 0.68 | 0.828757 |
Target: 5'- cCCUCCUGCUCcugccccuCCUCCUGCu -3' miRNA: 3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 144391 | 0.68 | 0.825355 |
Target: 5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3' miRNA: 3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 7041 | 0.69 | 0.807929 |
Target: 5'- uCCUCUgccgGCUCAucaAGGCCUCCCu- -3' miRNA: 3'- uGGAGGa---CGAGUuucUCUGGAGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 150584 | 0.69 | 0.807929 |
Target: 5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3' miRNA: 3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 9831 | 0.69 | 0.807929 |
Target: 5'- aACCUUUUGCUCAAGGAG-UCUCUg-- -3' miRNA: 3'- -UGGAGGACGAGUUUCUCuGGAGGgug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 19531 | 0.69 | 0.807929 |
Target: 5'- cCCUagcaUUGUUCAgccgaacgcccAAGAGaACCUCCCACa -3' miRNA: 3'- uGGAg---GACGAGU-----------UUCUC-UGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 87882 | 0.69 | 0.780599 |
Target: 5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3' miRNA: 3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 116193 | 0.69 | 0.780599 |
Target: 5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3' miRNA: 3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 16602 | 0.69 | 0.780599 |
Target: 5'- cGCCUUCUuccaGCUCAucAGAGACCUCa-GCg -3' miRNA: 3'- -UGGAGGA----CGAGUu-UCUCUGGAGggUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 4086 | 0.69 | 0.780599 |
Target: 5'- gGCCUCCUGC-Ccc-GAGACCggcucgUCCGCc -3' miRNA: 3'- -UGGAGGACGaGuuuCUCUGGa-----GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 55510 | 0.7 | 0.76169 |
Target: 5'- uGCCUgaugCUGUUUAGGGGGGCCUCCUcCg -3' miRNA: 3'- -UGGAg---GACGAGUUUCUCUGGAGGGuG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 65821 | 0.7 | 0.752055 |
Target: 5'- uGCCUCCUGCUacgccaaccaCAGAGGcACCaagCCCAUc -3' miRNA: 3'- -UGGAGGACGA----------GUUUCUcUGGa--GGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 108279 | 0.7 | 0.752055 |
Target: 5'- aGCCaCCgGC-CAAGGuccuGGGCCUCCCACc -3' miRNA: 3'- -UGGaGGaCGaGUUUC----UCUGGAGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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