miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 3628 0.68 0.841251
Target:  5'- cACCaCCUGCUCGuGAGuggagccggcgacGGACC-CCCACu -3'
miRNA:   3'- -UGGaGGACGAGU-UUC-------------UCUGGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 4086 0.69 0.780599
Target:  5'- gGCCUCCUGC-Ccc-GAGACCggcucgUCCGCc -3'
miRNA:   3'- -UGGAGGACGaGuuuCUCUGGa-----GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 7041 0.69 0.807929
Target:  5'- uCCUCUgccgGCUCAucaAGGCCUCCCu- -3'
miRNA:   3'- uGGAGGa---CGAGUuucUCUGGAGGGug -5'
33571 3' -55.5 NC_007605.1 + 8357 0.66 0.913059
Target:  5'- cACCcgCCaUGCU---GGAGGCCUCgCACg -3'
miRNA:   3'- -UGGa-GG-ACGAguuUCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 9831 0.69 0.807929
Target:  5'- aACCUUUUGCUCAAGGAG-UCUCUg-- -3'
miRNA:   3'- -UGGAGGACGAGUUUCUCuGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 12479 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 13516 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 15548 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 16585 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 16602 0.69 0.780599
Target:  5'- cGCCUUCUuccaGCUCAucAGAGACCUCa-GCg -3'
miRNA:   3'- -UGGAGGA----CGAGUu-UCUCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 18617 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 19531 0.69 0.807929
Target:  5'- cCCUagcaUUGUUCAgccgaacgcccAAGAGaACCUCCCACa -3'
miRNA:   3'- uGGAg---GACGAGU-----------UUCUC-UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 19654 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 21686 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 22723 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 24755 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 25792 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 27824 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 28111 0.66 0.929823
Target:  5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3'
miRNA:   3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5'
33571 3' -55.5 NC_007605.1 + 28861 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.