miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 30893 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 33961 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 34998 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 48293 0.68 0.850138
Target:  5'- gGCCUCC--CUCcaGAAGaAGGCCUCCgACa -3'
miRNA:   3'- -UGGAGGacGAG--UUUC-UCUGGAGGgUG- -5'
33571 3' -55.5 NC_007605.1 + 55510 0.7 0.76169
Target:  5'- uGCCUgaugCUGUUUAGGGGGGCCUCCUcCg -3'
miRNA:   3'- -UGGAg---GACGAGUUUCUCUGGAGGGuG- -5'
33571 3' -55.5 NC_007605.1 + 56619 0.66 0.909445
Target:  5'- gGCCUCCagcuuugcggccaggUGCUUAuGGAacUCUCCCGCu -3'
miRNA:   3'- -UGGAGG---------------ACGAGUuUCUcuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 56821 0.67 0.900679
Target:  5'- aGCC-CCUGCUCGAGGAccaCUgUCACa -3'
miRNA:   3'- -UGGaGGACGAGUUUCUcugGAgGGUG- -5'
33571 3' -55.5 NC_007605.1 + 59249 0.66 0.919459
Target:  5'- aGCUUCCUGCUCGuguccaauauCCUCCCcCa -3'
miRNA:   3'- -UGGAGGACGAGUuucucu----GGAGGGuG- -5'
33571 3' -55.5 NC_007605.1 + 60426 0.68 0.846934
Target:  5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3'
miRNA:   3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 61787 0.67 0.900679
Target:  5'- cGCCUCCUGCaCAcGAGcggccaGGGCCUCCa-- -3'
miRNA:   3'- -UGGAGGACGaGU-UUC------UCUGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 65821 0.7 0.752055
Target:  5'- uGCCUCCUGCUacgccaaccaCAGAGGcACCaagCCCAUc -3'
miRNA:   3'- -UGGAGGACGA----------GUUUCUcUGGa--GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 67518 0.66 0.906988
Target:  5'- -gCUCCUugugcaGCUUAAAGAGACUcaggcccucaUUCCACg -3'
miRNA:   3'- ugGAGGA------CGAGUUUCUCUGG----------AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 68370 0.67 0.893466
Target:  5'- gGCCggCCUGCUgAcgucagcGGGGGACCUgCCGu -3'
miRNA:   3'- -UGGa-GGACGAgU-------UUCUCUGGAgGGUg -5'
33571 3' -55.5 NC_007605.1 + 75109 0.7 0.752055
Target:  5'- cACCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- -UGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75167 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75191 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75215 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75242 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75293 0.66 0.913059
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75341 0.67 0.887356
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.