miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 75371 0.67 0.887356
Target:  5'- cCCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75422 0.67 0.900679
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75470 0.68 0.828757
Target:  5'- cCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75524 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75551 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75605 0.66 0.924477
Target:  5'- uCCUCCUGCUCcugcc--CCUCCUGCc -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75632 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75686 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75749 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75782 0.72 0.620451
Target:  5'- cCCUCCUGCUCcugcc--CCUCCCGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 79396 0.68 0.842069
Target:  5'- gGCCUCCUaaGCUCcAAGuucaAGGCCUUuuGCa -3'
miRNA:   3'- -UGGAGGA--CGAGuUUC----UCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 79548 0.66 0.905745
Target:  5'- gGCCUCCUaCUCcagccacgccggacaGAGGAGcuacgugagcggcguGCUUCCCGCg -3'
miRNA:   3'- -UGGAGGAcGAG---------------UUUCUC---------------UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 86364 0.67 0.887356
Target:  5'- uGCCUCUaacuggGUUCAuGGGGGCCaucuaaggCCCACg -3'
miRNA:   3'- -UGGAGGa-----CGAGUuUCUCUGGa-------GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87748 0.79 0.270795
Target:  5'- gGCCUCCUGC-CGu-GGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87778 0.78 0.341599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87808 0.77 0.381712
Target:  5'- gGCCUCCUGCcgCGGGGcuccugccgcgGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGa-GUUUC-----------UCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87882 0.69 0.780599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 107649 0.67 0.883179
Target:  5'- uCCUCCUGUUUccucccguuaagucuAGAGAaucACCUCCCAg -3'
miRNA:   3'- uGGAGGACGAG---------------UUUCUc--UGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 108279 0.7 0.752055
Target:  5'- aGCCaCCgGC-CAAGGuccuGGGCCUCCCACc -3'
miRNA:   3'- -UGGaGGaCGaGUUUC----UCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 111264 0.73 0.589614
Target:  5'- -gCUCCUGCUCAcGGAGcuCCUccaCCCGCu -3'
miRNA:   3'- ugGAGGACGAGUuUCUCu-GGA---GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.