miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 111387 0.66 0.924477
Target:  5'- cGCCUCCUGgugccggccCUCAGGGAGAgCCggggcaUCGCg -3'
miRNA:   3'- -UGGAGGAC---------GAGUUUCUCU-GGag----GGUG- -5'
33571 3' -55.5 NC_007605.1 + 114282 0.71 0.682143
Target:  5'- uCCUCCUGCUCAGc---AgCUCCCACc -3'
miRNA:   3'- uGGAGGACGAGUUucucUgGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 116193 0.69 0.780599
Target:  5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3'
miRNA:   3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 116674 1.08 0.003461
Target:  5'- gACCUCCUGCUCAAAGAGACCUCCCACc -3'
miRNA:   3'- -UGGAGGACGAGUUUCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 123575 0.7 0.752055
Target:  5'- gGCCUCCUGUguugCAGGGAGuaggucucgcGCCugUCUCGCg -3'
miRNA:   3'- -UGGAGGACGa---GUUUCUC----------UGG--AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 126542 0.72 0.641066
Target:  5'- uGCUUCCUGC-CuguGGAGGCUauuuaUCCCGCg -3'
miRNA:   3'- -UGGAGGACGaGuu-UCUCUGG-----AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 130927 0.66 0.929823
Target:  5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3'
miRNA:   3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5'
33571 3' -55.5 NC_007605.1 + 133707 0.71 0.702465
Target:  5'- gGCCUaCCUGCUacucCAGGGGGG-CUCUCACa -3'
miRNA:   3'- -UGGA-GGACGA----GUUUCUCUgGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 137673 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 140741 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 143810 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 144391 0.68 0.825355
Target:  5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3'
miRNA:   3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5'
33571 3' -55.5 NC_007605.1 + 146879 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 149948 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 150584 0.69 0.807929
Target:  5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3'
miRNA:   3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 153017 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 156086 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 157413 0.74 0.509232
Target:  5'- cGCCUCCgacGcCUCAGaacggcggcgGGGGugCUCCCGCg -3'
miRNA:   3'- -UGGAGGa--C-GAGUU----------UCUCugGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 159155 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 159526 0.67 0.86567
Target:  5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3'
miRNA:   3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.