Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 3' | -55.5 | NC_007605.1 | + | 159526 | 0.67 | 0.86567 |
Target: 5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3' miRNA: 3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 159155 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 157413 | 0.74 | 0.509232 |
Target: 5'- cGCCUCCgacGcCUCAGaacggcggcgGGGGugCUCCCGCg -3' miRNA: 3'- -UGGAGGa--C-GAGUU----------UCUCugGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 156086 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 153017 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 150584 | 0.69 | 0.807929 |
Target: 5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3' miRNA: 3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 149948 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 146879 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 144391 | 0.68 | 0.825355 |
Target: 5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3' miRNA: 3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 143810 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 140741 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 137673 | 0.67 | 0.87312 |
Target: 5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3' miRNA: 3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 133707 | 0.71 | 0.702465 |
Target: 5'- gGCCUaCCUGCUacucCAGGGGGG-CUCUCACa -3' miRNA: 3'- -UGGA-GGACGA----GUUUCUCUgGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 130927 | 0.66 | 0.929823 |
Target: 5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3' miRNA: 3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 126542 | 0.72 | 0.641066 |
Target: 5'- uGCUUCCUGC-CuguGGAGGCUauuuaUCCCGCg -3' miRNA: 3'- -UGGAGGACGaGuu-UCUCUGG-----AGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 123575 | 0.7 | 0.752055 |
Target: 5'- gGCCUCCUGUguugCAGGGAGuaggucucgcGCCugUCUCGCg -3' miRNA: 3'- -UGGAGGACGa---GUUUCUC----------UGG--AGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 116674 | 1.08 | 0.003461 |
Target: 5'- gACCUCCUGCUCAAAGAGACCUCCCACc -3' miRNA: 3'- -UGGAGGACGAGUUUCUCUGGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 116193 | 0.69 | 0.780599 |
Target: 5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3' miRNA: 3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 114282 | 0.71 | 0.682143 |
Target: 5'- uCCUCCUGCUCAGc---AgCUCCCACc -3' miRNA: 3'- uGGAGGACGAGUUucucUgGAGGGUG- -5' |
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33571 | 3' | -55.5 | NC_007605.1 | + | 111387 | 0.66 | 0.924477 |
Target: 5'- cGCCUCCUGgugccggccCUCAGGGAGAgCCggggcaUCGCg -3' miRNA: 3'- -UGGAGGAC---------GAGUUUCUCU-GGag----GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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