miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 116193 0.69 0.780599
Target:  5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3'
miRNA:   3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 24755 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 27824 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 30893 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 33961 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 123575 0.7 0.752055
Target:  5'- gGCCUCCUGUguugCAGGGAGuaggucucgcGCCugUCUCGCg -3'
miRNA:   3'- -UGGAGGACGa---GUUUCUC----------UGG--AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 108279 0.7 0.752055
Target:  5'- aGCCaCCgGC-CAAGGuccuGGGCCUCCCACc -3'
miRNA:   3'- -UGGaGGaCGaGUUUC----UCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 4086 0.69 0.780599
Target:  5'- gGCCUCCUGC-Ccc-GAGACCggcucgUCCGCc -3'
miRNA:   3'- -UGGAGGACGaGuuuCUCUGGa-----GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87882 0.69 0.780599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 21686 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 18617 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 15548 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87748 0.79 0.270795
Target:  5'- gGCCUCCUGC-CGu-GGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87778 0.78 0.341599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87808 0.77 0.381712
Target:  5'- gGCCUCCUGCcgCGGGGcuccugccgcgGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGa-GUUUC-----------UCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 157413 0.74 0.509232
Target:  5'- cGCCUCCgacGcCUCAGaacggcggcgGGGGugCUCCCGCg -3'
miRNA:   3'- -UGGAGGa--C-GAGUU----------UCUCugGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 111264 0.73 0.589614
Target:  5'- -gCUCCUGCUCAcGGAGcuCCUccaCCCGCu -3'
miRNA:   3'- ugGAGGACGAGUuUCUCu-GGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 126542 0.72 0.641066
Target:  5'- uGCUUCCUGC-CuguGGAGGCUauuuaUCCCGCg -3'
miRNA:   3'- -UGGAGGACGaGuu-UCUCUGG-----AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 133707 0.71 0.702465
Target:  5'- gGCCUaCCUGCUacucCAGGGGGG-CUCUCACa -3'
miRNA:   3'- -UGGA-GGACGA----GUUUCUCUgGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 12479 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.