miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 149948 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 75470 0.68 0.828757
Target:  5'- cCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 19531 0.69 0.807929
Target:  5'- cCCUagcaUUGUUCAgccgaacgcccAAGAGaACCUCCCACa -3'
miRNA:   3'- uGGAg---GACGAGU-----------UUCUC-UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 7041 0.69 0.807929
Target:  5'- uCCUCUgccgGCUCAucaAGGCCUCCCu- -3'
miRNA:   3'- uGGAGGa---CGAGUuucUCUGGAGGGug -5'
33571 3' -55.5 NC_007605.1 + 16602 0.69 0.780599
Target:  5'- cGCCUUCUuccaGCUCAucAGAGACCUCa-GCg -3'
miRNA:   3'- -UGGAGGA----CGAGUu-UCUCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 55510 0.7 0.76169
Target:  5'- uGCCUgaugCUGUUUAGGGGGGCCUCCUcCg -3'
miRNA:   3'- -UGGAg---GACGAGUUUCUCUGGAGGGuG- -5'
33571 3' -55.5 NC_007605.1 + 75109 0.7 0.752055
Target:  5'- cACCUCCUGCUCcugcc--CCUCCUGCu -3'
miRNA:   3'- -UGGAGGACGAGuuucucuGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 65821 0.7 0.752055
Target:  5'- uGCCUCCUGCUacgccaaccaCAGAGGcACCaagCCCAUc -3'
miRNA:   3'- -UGGAGGACGA----------GUUUCUcUGGa--GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 114282 0.71 0.682143
Target:  5'- uCCUCCUGCUCAGc---AgCUCCCACc -3'
miRNA:   3'- uGGAGGACGAGUUucucUgGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 3628 0.68 0.841251
Target:  5'- cACCaCCUGCUCGuGAGuggagccggcgacGGACC-CCCACu -3'
miRNA:   3'- -UGGaGGACGAGU-UUC-------------UCUGGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 79396 0.68 0.842069
Target:  5'- gGCCUCCUaaGCUCcAAGuucaAGGCCUUuuGCa -3'
miRNA:   3'- -UGGAGGA--CGAGuUUC----UCUGGAGggUG- -5'
33571 3' -55.5 NC_007605.1 + 146879 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 143810 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 140741 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 137673 0.67 0.87312
Target:  5'- cCCUCCUgagacagcagGCUCGccaccccAGACCUCCCAg -3'
miRNA:   3'- uGGAGGA----------CGAGUuuc----UCUGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 75749 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75686 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75632 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75551 0.68 0.84532
Target:  5'- uCCUCCUGCUCcugccccuCCUCCUGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucu-GGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 75782 0.72 0.620451
Target:  5'- cCCUCCUGCUCcugcc--CCUCCCGCu -3'
miRNA:   3'- uGGAGGACGAGuuucucuGGAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.