miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 28111 0.66 0.929823
Target:  5'- cCCUCCUgGUUCAAcccuauggaGGGGACCcUCCUg- -3'
miRNA:   3'- uGGAGGA-CGAGUU---------UCUCUGG-AGGGug -5'
33571 3' -55.5 NC_007605.1 + 18617 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87778 0.78 0.341599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCCUGCc -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 22723 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 111264 0.73 0.589614
Target:  5'- -gCUCCUGCUCAcGGAGcuCCUccaCCCGCu -3'
miRNA:   3'- ugGAGGACGAGUuUCUCu-GGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 126542 0.72 0.641066
Target:  5'- uGCUUCCUGC-CuguGGAGGCUauuuaUCCCGCg -3'
miRNA:   3'- -UGGAGGACGaGuu-UCUCUGG-----AGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 21686 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 24755 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 27824 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 16585 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 13516 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 159526 0.67 0.86567
Target:  5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3'
miRNA:   3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5'
33571 3' -55.5 NC_007605.1 + 48293 0.68 0.850138
Target:  5'- gGCCUCC--CUCcaGAAGaAGGCCUCCgACa -3'
miRNA:   3'- -UGGAGGacGAG--UUUC-UCUGGAGGgUG- -5'
33571 3' -55.5 NC_007605.1 + 60426 0.68 0.846934
Target:  5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3'
miRNA:   3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 150584 0.69 0.807929
Target:  5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3'
miRNA:   3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 144391 0.68 0.825355
Target:  5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3'
miRNA:   3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5'
33571 3' -55.5 NC_007605.1 + 9831 0.69 0.807929
Target:  5'- aACCUUUUGCUCAAGGAG-UCUCUg-- -3'
miRNA:   3'- -UGGAGGACGAGUUUCUCuGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 116193 0.69 0.780599
Target:  5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3'
miRNA:   3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 87882 0.69 0.780599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 30893 0.7 0.742314
Target:  5'- aGCCUgCUGuCUCAgGAGGGGCCUggcUCCGCc -3'
miRNA:   3'- -UGGAgGAC-GAGU-UUCUCUGGA---GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.