miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 3' -55.5 NC_007605.1 + 87882 0.69 0.780599
Target:  5'- gGCCUCCUGC-CGc-GGGGCCUCaCAUa -3'
miRNA:   3'- -UGGAGGACGaGUuuCUCUGGAGgGUG- -5'
33571 3' -55.5 NC_007605.1 + 19654 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 25792 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 28861 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 34998 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 86364 0.67 0.887356
Target:  5'- uGCCUCUaacuggGUUCAuGGGGGCCaucuaaggCCCACg -3'
miRNA:   3'- -UGGAGGa-----CGAGUuUCUCUGGa-------GGGUG- -5'
33571 3' -55.5 NC_007605.1 + 68370 0.67 0.893466
Target:  5'- gGCCggCCUGCUgAcgucagcGGGGGACCUgCCGu -3'
miRNA:   3'- -UGGa-GGACGAgU-------UUCUCUGGAgGGUg -5'
33571 3' -55.5 NC_007605.1 + 61787 0.67 0.900679
Target:  5'- cGCCUCCUGCaCAcGAGcggccaGGGCCUCCa-- -3'
miRNA:   3'- -UGGAGGACGaGU-UUC------UCUGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 56821 0.67 0.900679
Target:  5'- aGCC-CCUGCUCGAGGAccaCUgUCACa -3'
miRNA:   3'- -UGGaGGACGAGUUUCUcugGAgGGUG- -5'
33571 3' -55.5 NC_007605.1 + 16585 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 22723 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 116193 0.69 0.780599
Target:  5'- cCCUCCUGaUCAAAGAGGgC-CUCGCu -3'
miRNA:   3'- uGGAGGACgAGUUUCUCUgGaGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 9831 0.69 0.807929
Target:  5'- aACCUUUUGCUCAAGGAG-UCUCUg-- -3'
miRNA:   3'- -UGGAGGACGAGUUUCUCuGGAGGgug -5'
33571 3' -55.5 NC_007605.1 + 150584 0.69 0.807929
Target:  5'- gACCggggUCCaUGCUCAGAGAacaGcCCUCCCGg -3'
miRNA:   3'- -UGG----AGG-ACGAGUUUCU---CuGGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 144391 0.68 0.825355
Target:  5'- uGCCUCCUGUgguggCAGAGcuuGGCCcugggCCCAa -3'
miRNA:   3'- -UGGAGGACGa----GUUUCu--CUGGa----GGGUg -5'
33571 3' -55.5 NC_007605.1 + 60426 0.68 0.846934
Target:  5'- cGCCUCCUccuccucuuccgucGC-CAGAGGGAucugcacCCUCCCGg -3'
miRNA:   3'- -UGGAGGA--------------CGaGUUUCUCU-------GGAGGGUg -5'
33571 3' -55.5 NC_007605.1 + 48293 0.68 0.850138
Target:  5'- gGCCUCC--CUCcaGAAGaAGGCCUCCgACa -3'
miRNA:   3'- -UGGAGGacGAG--UUUC-UCUGGAGGgUG- -5'
33571 3' -55.5 NC_007605.1 + 159526 0.67 0.86567
Target:  5'- cACCUCCggGCUCucccGGGAcGCCUCCUc- -3'
miRNA:   3'- -UGGAGGa-CGAGu---UUCUcUGGAGGGug -5'
33571 3' -55.5 NC_007605.1 + 13516 0.67 0.88035
Target:  5'- gUCUCCUGUgcacugucugUAAAGuccaGCCUCCCACg -3'
miRNA:   3'- uGGAGGACGa---------GUUUCuc--UGGAGGGUG- -5'
33571 3' -55.5 NC_007605.1 + 56619 0.66 0.909445
Target:  5'- gGCCUCCagcuuugcggccaggUGCUUAuGGAacUCUCCCGCu -3'
miRNA:   3'- -UGGAGG---------------ACGAGUuUCUcuGGAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.