miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 49470 0.66 0.698976
Target:  5'- cAGGCuCaGGCCGCCGcaUCCGcuGGGAccGGGg -3'
miRNA:   3'- -UCUGcGcCCGGUGGC--AGGC--CCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 142017 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141915 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141610 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 171207 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 140998 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 140794 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141100 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141202 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 158445 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 169610 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 141508 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141304 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 170669 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 106605 0.66 0.727043
Target:  5'- uGACGCGGGCCcugacGCUcUCCGcGGGu--- -3'
miRNA:   3'- uCUGCGCCCGG-----UGGcAGGC-CCCuucc -5'
33571 5' -62.2 NC_007605.1 + 141406 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 170147 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 121257 0.66 0.698976
Target:  5'- gAGGCcCGGGaCgGCCGUCUGGcgauaGGAGGa -3'
miRNA:   3'- -UCUGcGCCC-GgUGGCAGGCCc----CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140896 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 160558 0.66 0.689512
Target:  5'- aGGGCGCugcaugcacGGUCauucuGCCGUCucaaaCGGGGAAGGa -3'
miRNA:   3'- -UCUGCGc--------CCGG-----UGGCAG-----GCCCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.