miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 142832 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 142730 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 142629 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141304 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141406 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 142221 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 142119 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 138243 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 77472 0.67 0.670464
Target:  5'- uGAcCGUGGGaaCCGCCGUCUuuuggccacuGGGGGccuGGGg -3'
miRNA:   3'- uCU-GCGCCC--GGUGGCAGG----------CCCCU---UCC- -5'
33571 5' -62.2 NC_007605.1 + 141312 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 144381 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 147450 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 150519 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 153588 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 97734 0.67 0.674284
Target:  5'- cAGA-GCcuGGCCGCCGUCaCgucccuggccgagcuGGGGGAGGu -3'
miRNA:   3'- -UCUgCGc-CCGGUGGCAG-G---------------CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 57491 0.67 0.632095
Target:  5'- uGGCGUGGGCUGCUG-CUGaGGAAGa -3'
miRNA:   3'- uCUGCGCCCGGUGGCaGGCcCCUUCc -5'
33571 5' -62.2 NC_007605.1 + 63136 0.67 0.632095
Target:  5'- gGGugGC-GGCCGCCaGUCUuuGGGGAc-- -3'
miRNA:   3'- -UCugCGcCCGGUGG-CAGG--CCCCUucc -5'
33571 5' -62.2 NC_007605.1 + 157449 0.67 0.641704
Target:  5'- --cCGCGGGCCGCgGauggggCUGGGGGcgauGGa -3'
miRNA:   3'- ucuGCGCCCGGUGgCa-----GGCCCCUu---CC- -5'
33571 5' -62.2 NC_007605.1 + 66951 0.67 0.650347
Target:  5'- aGGugGCGG-CCGCCGUcacccugCCGGaGAAGa -3'
miRNA:   3'- -UCugCGCCcGGUGGCA-------GGCCcCUUCc -5'
33571 5' -62.2 NC_007605.1 + 50651 0.67 0.651307
Target:  5'- cGGGCGCacgGGGUCGcagcCCGacggCCGuGGGGAGGc -3'
miRNA:   3'- -UCUGCG---CCCGGU----GGCa---GGC-CCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.