Results 61 - 80 of 157 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 165962 | 0.67 | 0.651307 |
Target: 5'- uGGGCGCGGGUCccccuagccCCGg-CGGGGAuccGGa -3' miRNA: 3'- -UCUGCGCCCGGu--------GGCagGCCCCUu--CC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 77472 | 0.67 | 0.670464 |
Target: 5'- uGAcCGUGGGaaCCGCCGUCUuuuggccacuGGGGGccuGGGg -3' miRNA: 3'- uCU-GCGCCC--GGUGGCAGG----------CCCCU---UCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 138243 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 150295 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 156433 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 137404 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 153364 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 151894 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 141088 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 108858 | 0.68 | 0.584176 |
Target: 5'- uGACGCGucaguuGCUGCUGUCUGGGGAc-- -3' miRNA: 3'- uCUGCGCc-----CGGUGGCAGGCCCCUucc -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 140473 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 158032 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 154963 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 136550 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 149680 | 0.68 | 0.583223 |
Target: 5'- cAGGCGCgGGGCCggucggcuggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG-------------UGGCa---GGCCC---CuuCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 153094 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 150025 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 70889 | 0.68 | 0.584176 |
Target: 5'- cAGGgGCGuGCCGCgCGgggaaCCGGGGGAGa -3' miRNA: 3'- -UCUgCGCcCGGUG-GCa----GGCCCCUUCc -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 145756 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
|||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 139619 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home