Results 81 - 100 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 140818 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153094 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 150025 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 135187 | 0.68 | 0.603293 |
Target: 5'- gGGGCGCaGGGCCucuGCCGggaagcccacCCGGGccAGGg -3' miRNA: 3'- -UCUGCG-CCCGG---UGGCa---------GGCCCcuUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 58110 | 0.68 | 0.565181 |
Target: 5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcaGAGGc -3' miRNA: 3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 58065 | 0.68 | 0.565181 |
Target: 5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcgGAGGc -3' miRNA: 3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 124986 | 0.68 | 0.592766 |
Target: 5'- gAGA-GCaGGucggcauCCACCGUCagauaGGGGAAGGg -3' miRNA: 3'- -UCUgCGcCC-------GGUGGCAGg----CCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 35089 | 0.68 | 0.603293 |
Target: 5'- --cCGCGGGCCcggcguaguaACC-UCCuGGGGAGGu -3' miRNA: 3'- ucuGCGCCCGG----------UGGcAGGcCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 158886 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 155817 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 152748 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146611 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143542 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 137404 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 151894 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 145756 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 139619 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 137749 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143887 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146956 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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