miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 152748 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 143542 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 35089 0.68 0.603293
Target:  5'- --cCGCGGGCCcggcguaguaACC-UCCuGGGGAGGu -3'
miRNA:   3'- ucuGCGCCCGG----------UGGcAGGcCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 86432 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 86372 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 158886 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 155817 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 74244 0.69 0.527724
Target:  5'- cGGCGUGaGGCCGCgcaGgaaGGGGAAGGc -3'
miRNA:   3'- uCUGCGC-CCGGUGg--CaggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 40255 0.69 0.50934
Target:  5'- cAGcCGCGGcccagcgcGCC-CCGUUcaCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC--------CGGuGGCAG--GCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 112346 0.69 0.537009
Target:  5'- cGGGCcucguGCcaGGGCCugUuGUCCuGGGGGAGGa -3'
miRNA:   3'- -UCUG-----CG--CCCGGugG-CAGG-CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 161766 0.69 0.537009
Target:  5'- -cGCGCuGGCC-CCG-CUGGGGAcAGGg -3'
miRNA:   3'- ucUGCGcCCGGuGGCaGGCCCCU-UCC- -5'
33571 5' -62.2 NC_007605.1 + 34574 0.69 0.500248
Target:  5'- gGGcuuCGgGGGCCugUGUgcCCGGGGguGGa -3'
miRNA:   3'- -UCu--GCgCCCGGugGCA--GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 21002 0.69 0.536078
Target:  5'- cGACGUucugcuggagcccGGGCCGCCcaCCGcccGGGAGGGc -3'
miRNA:   3'- uCUGCG-------------CCCGGUGGcaGGC---CCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 160156 0.7 0.455948
Target:  5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3'
miRNA:   3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 136768 0.7 0.455948
Target:  5'- aAGGCgGgGGGCUAUUc-CCGGGGGAGGa -3'
miRNA:   3'- -UCUG-CgCCCGGUGGcaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 3649 0.7 0.482287
Target:  5'- aGGACGCGuGGCacaGCaGcCCGGGGuAGGu -3'
miRNA:   3'- -UCUGCGC-CCGg--UGgCaGGCCCCuUCC- -5'
33571 5' -62.2 NC_007605.1 + 10797 0.7 0.482287
Target:  5'- cGGC-CGGGCUGCUG-CUGGGuGGAGGa -3'
miRNA:   3'- uCUGcGCCCGGUGGCaGGCCC-CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 6993 0.71 0.422905
Target:  5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 54535 0.71 0.422077
Target:  5'- gGGugGCGGGCCAagcguCCaGUCUGGccaGAGGGc -3'
miRNA:   3'- -UCugCGCCCGGU-----GG-CAGGCCc--CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 153899 0.71 0.39769
Target:  5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3'
miRNA:   3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.