Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 20512 | 0.72 | 0.389765 |
Target: 5'- gGGGCaCGGGCCGCCGa--GGGGcAGGc -3' miRNA: 3'- -UCUGcGCCCGGUGGCaggCCCCuUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38439 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 65674 | 0.72 | 0.351721 |
Target: 5'- cGACG-GGGCCACCGgCCGuGGuGGGGa -3' miRNA: 3'- uCUGCgCCCGGUGGCaGGC-CCcUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 63584 | 0.72 | 0.381944 |
Target: 5'- uGGACGCGuGGCUcuCCGgcggcgCCGGGGguGGc -3' miRNA: 3'- -UCUGCGC-CCGGu-GGCa-----GGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 57583 | 0.72 | 0.359115 |
Target: 5'- uGGugGUggGGGCUGCUGcugcagUCGGGGAAGGg -3' miRNA: 3'- -UCugCG--CCCGGUGGCa-----GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38564 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38689 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38814 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38938 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39063 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39188 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39313 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38314 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39563 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39688 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39438 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 107082 | 0.71 | 0.438826 |
Target: 5'- aGGGCGUGGaGCagcaCACCGUCUGGGaGGuuAGGu -3' miRNA: 3'- -UCUGCGCC-CG----GUGGCAGGCCC-CU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 6993 | 0.71 | 0.422905 |
Target: 5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3' miRNA: 3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 54535 | 0.71 | 0.422077 |
Target: 5'- gGGugGCGGGCCAagcguCCaGUCUGGccaGAGGGc -3' miRNA: 3'- -UCugCGCCCGGU-----GG-CAGGCCc--CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153899 | 0.71 | 0.39769 |
Target: 5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3' miRNA: 3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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