miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 116708 1.09 0.001182
Target:  5'- uAGACGCGGGCCACCGUCCGGGGAAGGu -3'
miRNA:   3'- -UCUGCGCCCGGUGGCAGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 168934 0.79 0.144502
Target:  5'- uGGCGcCGGGCCGCCGcccuggcaucugcUCCGGGGccGGu -3'
miRNA:   3'- uCUGC-GCCCGGUGGC-------------AGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 63058 0.78 0.159465
Target:  5'- uGGCGCgcaGGGCUGCUGgccCCGGGGGAGGu -3'
miRNA:   3'- uCUGCG---CCCGGUGGCa--GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 149796 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 146727 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 143659 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 137521 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 159003 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 155934 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140590 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 152865 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 34248 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 12766 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 15835 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 18904 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 21972 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 25041 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 28110 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 31179 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 60935 0.73 0.337258
Target:  5'- aGGACgGCGGGCC-CgGgucagcUCgGGGGAAGGg -3'
miRNA:   3'- -UCUG-CGCCCGGuGgC------AGgCCCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.