Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 160156 | 0.7 | 0.455948 |
Target: 5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3' miRNA: 3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 136768 | 0.7 | 0.455948 |
Target: 5'- aAGGCgGgGGGCUAUUc-CCGGGGGAGGa -3' miRNA: 3'- -UCUG-CgCCCGGUGGcaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 10797 | 0.7 | 0.482287 |
Target: 5'- cGGC-CGGGCUGCUG-CUGGGuGGAGGa -3' miRNA: 3'- uCUGcGCCCGGUGGCaGGCCC-CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 3649 | 0.7 | 0.482287 |
Target: 5'- aGGACGCGuGGCacaGCaGcCCGGGGuAGGu -3' miRNA: 3'- -UCUGCGC-CCGg--UGgCaGGCCCCuUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 34574 | 0.69 | 0.500248 |
Target: 5'- gGGcuuCGgGGGCCugUGUgcCCGGGGguGGa -3' miRNA: 3'- -UCu--GCgCCCGGugGCA--GGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 40255 | 0.69 | 0.50934 |
Target: 5'- cAGcCGCGGcccagcgcGCC-CCGUUcaCGGGGGAGGa -3' miRNA: 3'- -UCuGCGCC--------CGGuGGCAG--GCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 74244 | 0.69 | 0.527724 |
Target: 5'- cGGCGUGaGGCCGCgcaGgaaGGGGAAGGc -3' miRNA: 3'- uCUGCGC-CCGGUGg--CaggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 21002 | 0.69 | 0.536078 |
Target: 5'- cGACGUucugcuggagcccGGGCCGCCcaCCGcccGGGAGGGc -3' miRNA: 3'- uCUGCG-------------CCCGGUGGcaGGC---CCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 112346 | 0.69 | 0.537009 |
Target: 5'- cGGGCcucguGCcaGGGCCugUuGUCCuGGGGGAGGa -3' miRNA: 3'- -UCUG-----CG--CCCGGugG-CAGG-CCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 161766 | 0.69 | 0.537009 |
Target: 5'- -cGCGCuGGCC-CCG-CUGGGGAcAGGg -3' miRNA: 3'- ucUGCGcCCGGuGGCaGGCCCCU-UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 138019 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 159502 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 131607 | 0.68 | 0.555742 |
Target: 5'- cAGGCaaGCGGGgCACgccCUGGGGGAGGg -3' miRNA: 3'- -UCUG--CGCCCgGUGgcaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 156433 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153364 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 147226 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 144157 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141088 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 150295 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 59674 | 0.68 | 0.565181 |
Target: 5'- uGGCGgGGGCguUUGUCCcacGGGuGAGGGg -3' miRNA: 3'- uCUGCgCCCGguGGCAGG---CCC-CUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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