miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 58065 0.68 0.565181
Target:  5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcgGAGGc -3'
miRNA:   3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5'
33571 5' -62.2 NC_007605.1 + 58110 0.68 0.565181
Target:  5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcaGAGGc -3'
miRNA:   3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5'
33571 5' -62.2 NC_007605.1 + 137749 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 150025 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 153094 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 156163 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 143887 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 159232 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 146956 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 140818 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 149680 0.68 0.583223
Target:  5'- cAGGCGCgGGGCCggucggcuggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG-------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 158032 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 148825 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 151894 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 145756 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 136550 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 139619 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 70889 0.68 0.584176
Target:  5'- cAGGgGCGuGCCGCgCGgggaaCCGGGGGAGa -3'
miRNA:   3'- -UCUgCGCcCGGUG-GCa----GGCCCCUUCc -5'
33571 5' -62.2 NC_007605.1 + 108858 0.68 0.584176
Target:  5'- uGACGCGucaguuGCUGCUGUCUGGGGAc-- -3'
miRNA:   3'- uCUGCGCc-----CGGUGGCAGGCCCCUucc -5'
33571 5' -62.2 NC_007605.1 + 154963 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.