Results 81 - 100 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 66709 | 0.68 | 0.587991 |
Target: 5'- gGGAUGUGauggguggagaGGCCACCGUggcccgcagacacauUCGGGuGAAGGc -3' miRNA: 3'- -UCUGCGC-----------CCGGUGGCA---------------GGCCC-CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143542 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 155817 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 158886 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 137404 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140473 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146611 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 152748 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 124986 | 0.68 | 0.592766 |
Target: 5'- gAGA-GCaGGucggcauCCACCGUCagauaGGGGAAGGg -3' miRNA: 3'- -UCUgCGcCC-------GGUGGCAGg----CCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 86432 | 0.68 | 0.593722 |
Target: 5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3' miRNA: 3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 86372 | 0.68 | 0.593722 |
Target: 5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3' miRNA: 3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 135187 | 0.68 | 0.603293 |
Target: 5'- gGGGCGCaGGGCCucuGCCGggaagcccacCCGGGccAGGg -3' miRNA: 3'- -UCUGCG-CCCGG---UGGCa---------GGCCCcuUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 35089 | 0.68 | 0.603293 |
Target: 5'- --cCGCGGGCCcggcguaguaACC-UCCuGGGGAGGu -3' miRNA: 3'- ucuGCGCCCGG----------UGGcAGGcCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153760 | 0.68 | 0.612883 |
Target: 5'- gAGAUGgGGGCCACaaacaGgcUCCGGGuGGuguGGg -3' miRNA: 3'- -UCUGCgCCCGGUGg----C--AGGCCC-CUu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 57491 | 0.67 | 0.632095 |
Target: 5'- uGGCGUGGGCUGCUG-CUGaGGAAGa -3' miRNA: 3'- uCUGCGCCCGGUGGCaGGCcCCUUCc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 63136 | 0.67 | 0.632095 |
Target: 5'- gGGugGC-GGCCGCCaGUCUuuGGGGAc-- -3' miRNA: 3'- -UCugCGcCCGGUGG-CAGG--CCCCUucc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 17348 | 0.67 | 0.632095 |
Target: 5'- cAGGCuaGCcGGCCugCGcCCGGGaGAAGa -3' miRNA: 3'- -UCUG--CGcCCGGugGCaGGCCC-CUUCc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 157449 | 0.67 | 0.641704 |
Target: 5'- --cCGCGGGCCGCgGauggggCUGGGGGcgauGGa -3' miRNA: 3'- ucuGCGCCCGGUGgCa-----GGCCCCUu---CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 66951 | 0.67 | 0.650347 |
Target: 5'- aGGugGCGG-CCGCCGUcacccugCCGGaGAAGa -3' miRNA: 3'- -UCugCGCCcGGUGGCA-------GGCCcCUUCc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 50651 | 0.67 | 0.651307 |
Target: 5'- cGGGCGCacgGGGUCGcagcCCGacggCCGuGGGGAGGc -3' miRNA: 3'- -UCUGCG---CCCGGU----GGCa---GGC-CCCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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