Results 121 - 140 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 143220 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 152427 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 171207 | 0.66 | 0.689512 |
Target: 5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3' miRNA: 3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140151 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 49470 | 0.66 | 0.698976 |
Target: 5'- cAGGCuCaGGCCGCCGcaUCCGcuGGGAccGGGg -3' miRNA: 3'- -UCUGcGcCCGGUGGC--AGGC--CCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 121257 | 0.66 | 0.698976 |
Target: 5'- gAGGCcCGGGaCgGCCGUCUGGcgauaGGAGGa -3' miRNA: 3'- -UCUGcGCCC-GgUGGCAGGCCc----CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140031 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 158445 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 155376 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 152307 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 136962 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 149238 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146169 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143100 | 0.66 | 0.717749 |
Target: 5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3' miRNA: 3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141406 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141202 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141304 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140794 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140998 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140896 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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