Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 169610 | 0.66 | 0.689512 |
Target: 5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3' miRNA: 3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 152427 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 155496 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146289 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143220 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140151 | 0.66 | 0.689512 |
Target: 5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3' miRNA: 3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 156657 | 0.66 | 0.689512 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuGGGa -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 97734 | 0.67 | 0.674284 |
Target: 5'- cAGA-GCcuGGCCGCCGUCaCgucccuggccgagcuGGGGGAGGu -3' miRNA: 3'- -UCUgCGc-CCGGUGGCAG-G---------------CCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153588 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 147450 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 77472 | 0.67 | 0.670464 |
Target: 5'- uGAcCGUGGGaaCCGCCGUCUuuuggccacuGGGGGccuGGGg -3' miRNA: 3'- uCU-GCGCCC--GGUGGCAGG----------CCCCU---UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 144381 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141312 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 150519 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 138243 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 142688 | 0.67 | 0.651307 |
Target: 5'- gGGugGacagaGGGCCugUccaCCGuGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGGugGca-GGC-CCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 50651 | 0.67 | 0.651307 |
Target: 5'- cGGGCGCacgGGGUCGcagcCCGacggCCGuGGGGAGGc -3' miRNA: 3'- -UCUGCG---CCCGGU----GGCa---GGC-CCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 165962 | 0.67 | 0.651307 |
Target: 5'- uGGGCGCGGGUCccccuagccCCGg-CGGGGAuccGGa -3' miRNA: 3'- -UCUGCGCCCGGu--------GGCagGCCCCUu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 66951 | 0.67 | 0.650347 |
Target: 5'- aGGugGCGG-CCGCCGUcacccugCCGGaGAAGa -3' miRNA: 3'- -UCugCGCCcGGUGGCA-------GGCCcCUUCc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 157449 | 0.67 | 0.641704 |
Target: 5'- --cCGCGGGCCGCgGauggggCUGGGGGcgauGGa -3' miRNA: 3'- ucuGCGCCCGGUGgCa-----GGCCCCUu---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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