miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 57491 0.67 0.632095
Target:  5'- uGGCGUGGGCUGCUG-CUGaGGAAGa -3'
miRNA:   3'- uCUGCGCCCGGUGGCaGGCcCCUUCc -5'
33571 5' -62.2 NC_007605.1 + 17348 0.67 0.632095
Target:  5'- cAGGCuaGCcGGCCugCGcCCGGGaGAAGa -3'
miRNA:   3'- -UCUG--CGcCCGGugGCaGGCCC-CUUCc -5'
33571 5' -62.2 NC_007605.1 + 63136 0.67 0.632095
Target:  5'- gGGugGC-GGCCGCCaGUCUuuGGGGAc-- -3'
miRNA:   3'- -UCugCGcCCGGUGG-CAGG--CCCCUucc -5'
33571 5' -62.2 NC_007605.1 + 153760 0.68 0.612883
Target:  5'- gAGAUGgGGGCCACaaacaGgcUCCGGGuGGuguGGg -3'
miRNA:   3'- -UCUGCgCCCGGUGg----C--AGGCCC-CUu--CC- -5'
33571 5' -62.2 NC_007605.1 + 135187 0.68 0.603293
Target:  5'- gGGGCGCaGGGCCucuGCCGggaagcccacCCGGGccAGGg -3'
miRNA:   3'- -UCUGCG-CCCGG---UGGCa---------GGCCCcuUCC- -5'
33571 5' -62.2 NC_007605.1 + 35089 0.68 0.603293
Target:  5'- --cCGCGGGCCcggcguaguaACC-UCCuGGGGAGGu -3'
miRNA:   3'- ucuGCGCCCGG----------UGGcAGGcCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 86432 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 86372 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 124986 0.68 0.592766
Target:  5'- gAGA-GCaGGucggcauCCACCGUCagauaGGGGAAGGg -3'
miRNA:   3'- -UCUgCGcCC-------GGUGGCAGg----CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 137404 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 143542 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 155817 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 146611 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 158886 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 140473 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 152748 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 66709 0.68 0.587991
Target:  5'- gGGAUGUGauggguggagaGGCCACCGUggcccgcagacacauUCGGGuGAAGGc -3'
miRNA:   3'- -UCUGCGC-----------CCGGUGGCA---------------GGCCC-CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 154963 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 136550 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 108858 0.68 0.584176
Target:  5'- uGACGCGucaguuGCUGCUGUCUGGGGAc-- -3'
miRNA:   3'- uCUGCGCc-----CGGUGGCAGGCCCCUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.