miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 3649 0.7 0.482287
Target:  5'- aGGACGCGuGGCacaGCaGcCCGGGGuAGGu -3'
miRNA:   3'- -UCUGCGC-CCGg--UGgCaGGCCCCuUCC- -5'
33571 5' -62.2 NC_007605.1 + 6993 0.71 0.422905
Target:  5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 10797 0.7 0.482287
Target:  5'- cGGC-CGGGCUGCUG-CUGGGuGGAGGa -3'
miRNA:   3'- uCUGcGCCCGGUGGCaGGCCC-CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 12766 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 15835 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 17348 0.67 0.632095
Target:  5'- cAGGCuaGCcGGCCugCGcCCGGGaGAAGa -3'
miRNA:   3'- -UCUG--CGcCCGGugGCaGGCCC-CUUCc -5'
33571 5' -62.2 NC_007605.1 + 18904 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 20512 0.72 0.389765
Target:  5'- gGGGCaCGGGCCGCCGa--GGGGcAGGc -3'
miRNA:   3'- -UCUGcGCCCGGUGGCaggCCCCuUCC- -5'
33571 5' -62.2 NC_007605.1 + 21002 0.69 0.536078
Target:  5'- cGACGUucugcuggagcccGGGCCGCCcaCCGcccGGGAGGGc -3'
miRNA:   3'- uCUGCG-------------CCCGGUGGcaGGC---CCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 21972 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 25041 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 28110 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 31179 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 34248 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 34574 0.69 0.500248
Target:  5'- gGGcuuCGgGGGCCugUGUgcCCGGGGguGGa -3'
miRNA:   3'- -UCu--GCgCCCGGugGCA--GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 35089 0.68 0.603293
Target:  5'- --cCGCGGGCCcggcguaguaACC-UCCuGGGGAGGu -3'
miRNA:   3'- ucuGCGCCCGG----------UGGcAGGcCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 38314 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 38439 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 38564 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 38689 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.