miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 63584 0.72 0.381944
Target:  5'- uGGACGCGuGGCUcuCCGgcggcgCCGGGGguGGc -3'
miRNA:   3'- -UCUGCGC-CCGGu-GGCa-----GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 65674 0.72 0.351721
Target:  5'- cGACG-GGGCCACCGgCCGuGGuGGGGa -3'
miRNA:   3'- uCUGCgCCCGGUGGCaGGC-CCcUUCC- -5'
33571 5' -62.2 NC_007605.1 + 66709 0.68 0.587991
Target:  5'- gGGAUGUGauggguggagaGGCCACCGUggcccgcagacacauUCGGGuGAAGGc -3'
miRNA:   3'- -UCUGCGC-----------CCGGUGGCA---------------GGCCC-CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 66951 0.67 0.650347
Target:  5'- aGGugGCGG-CCGCCGUcacccugCCGGaGAAGa -3'
miRNA:   3'- -UCugCGCCcGGUGGCA-------GGCCcCUUCc -5'
33571 5' -62.2 NC_007605.1 + 70889 0.68 0.584176
Target:  5'- cAGGgGCGuGCCGCgCGgggaaCCGGGGGAGa -3'
miRNA:   3'- -UCUgCGCcCGGUG-GCa----GGCCCCUUCc -5'
33571 5' -62.2 NC_007605.1 + 74244 0.69 0.527724
Target:  5'- cGGCGUGaGGCCGCgcaGgaaGGGGAAGGc -3'
miRNA:   3'- uCUGCGC-CCGGUGg--CaggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 77472 0.67 0.670464
Target:  5'- uGAcCGUGGGaaCCGCCGUCUuuuggccacuGGGGGccuGGGg -3'
miRNA:   3'- uCU-GCGCCC--GGUGGCAGG----------CCCCU---UCC- -5'
33571 5' -62.2 NC_007605.1 + 86372 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 86432 0.68 0.593722
Target:  5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3'
miRNA:   3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5'
33571 5' -62.2 NC_007605.1 + 97734 0.67 0.674284
Target:  5'- cAGA-GCcuGGCCGCCGUCaCgucccuggccgagcuGGGGGAGGu -3'
miRNA:   3'- -UCUgCGc-CCGGUGGCAG-G---------------CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 106605 0.66 0.727043
Target:  5'- uGACGCGGGCCcugacGCUcUCCGcGGGu--- -3'
miRNA:   3'- uCUGCGCCCGG-----UGGcAGGC-CCCuucc -5'
33571 5' -62.2 NC_007605.1 + 107082 0.71 0.438826
Target:  5'- aGGGCGUGGaGCagcaCACCGUCUGGGaGGuuAGGu -3'
miRNA:   3'- -UCUGCGCC-CG----GUGGCAGGCCC-CU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 108858 0.68 0.584176
Target:  5'- uGACGCGucaguuGCUGCUGUCUGGGGAc-- -3'
miRNA:   3'- uCUGCGCc-----CGGUGGCAGGCCCCUucc -5'
33571 5' -62.2 NC_007605.1 + 112346 0.69 0.537009
Target:  5'- cGGGCcucguGCcaGGGCCugUuGUCCuGGGGGAGGa -3'
miRNA:   3'- -UCUG-----CG--CCCGGugG-CAGG-CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 116708 1.09 0.001182
Target:  5'- uAGACGCGGGCCACCGUCCGGGGAAGGu -3'
miRNA:   3'- -UCUGCGCCCGGUGGCAGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 121257 0.66 0.698976
Target:  5'- gAGGCcCGGGaCgGCCGUCUGGcgauaGGAGGa -3'
miRNA:   3'- -UCUGcGCCC-GgUGGCAGGCCc----CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 124986 0.68 0.592766
Target:  5'- gAGA-GCaGGucggcauCCACCGUCagauaGGGGAAGGg -3'
miRNA:   3'- -UCUgCGcCC-------GGUGGCAGg----CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 131607 0.68 0.555742
Target:  5'- cAGGCaaGCGGGgCACgccCUGGGGGAGGg -3'
miRNA:   3'- -UCUG--CGCCCgGUGgcaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 135187 0.68 0.603293
Target:  5'- gGGGCGCaGGGCCucuGCCGggaagcccacCCGGGccAGGg -3'
miRNA:   3'- -UCUGCG-CCCGG---UGGCa---------GGCCCcuUCC- -5'
33571 5' -62.2 NC_007605.1 + 136550 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.