miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 136768 0.7 0.455948
Target:  5'- aAGGCgGgGGGCUAUUc-CCGGGGGAGGa -3'
miRNA:   3'- -UCUG-CgCCCGGUGGcaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 136962 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 137082 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 137404 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 137521 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 137749 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 138019 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 138243 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 139619 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140031 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 140151 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140473 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 140590 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140794 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 140818 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 140896 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 140998 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141088 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 141100 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 141202 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.