miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 171207 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 170669 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 170147 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 169610 0.66 0.689512
Target:  5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3'
miRNA:   3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 168934 0.79 0.144502
Target:  5'- uGGCGcCGGGCCGCCGcccuggcaucugcUCCGGGGccGGu -3'
miRNA:   3'- uCUGC-GCCCGGUGGC-------------AGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 165962 0.67 0.651307
Target:  5'- uGGGCGCGGGUCccccuagccCCGg-CGGGGAuccGGa -3'
miRNA:   3'- -UCUGCGCCCGGu--------GGCagGCCCCUu--CC- -5'
33571 5' -62.2 NC_007605.1 + 161766 0.69 0.537009
Target:  5'- -cGCGCuGGCC-CCG-CUGGGGAcAGGg -3'
miRNA:   3'- ucUGCGcCCGGuGGCaGGCCCCU-UCC- -5'
33571 5' -62.2 NC_007605.1 + 160558 0.66 0.689512
Target:  5'- aGGGCGCugcaugcacGGUCauucuGCCGUCucaaaCGGGGAAGGa -3'
miRNA:   3'- -UCUGCGc--------CCGG-----UGGCAG-----GCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 160156 0.7 0.455948
Target:  5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3'
miRNA:   3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 159502 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 159232 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 159003 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 158886 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 158565 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 158445 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 158032 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 157449 0.67 0.641704
Target:  5'- --cCGCGGGCCGCgGauggggCUGGGGGcgauGGa -3'
miRNA:   3'- ucuGCGCCCGGUGgCa-----GGCCCCUu---CC- -5'
33571 5' -62.2 NC_007605.1 + 156657 0.66 0.689512
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuGGGa -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 156433 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 156163 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.