miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 155934 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 155817 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 155496 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 155376 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 154963 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 153899 0.71 0.39769
Target:  5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3'
miRNA:   3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 153760 0.68 0.612883
Target:  5'- gAGAUGgGGGCCACaaacaGgcUCCGGGuGGuguGGg -3'
miRNA:   3'- -UCUGCgCCCGGUGg----C--AGGCCC-CUu--CC- -5'
33571 5' -62.2 NC_007605.1 + 153588 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 153364 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 153094 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 152865 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 152748 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 152427 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 152307 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 151894 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 150519 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 150295 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 150025 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 149796 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 149680 0.68 0.583223
Target:  5'- cAGGCGCgGGGCCggucggcuggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG-------------UGGCa---GGCCC---CuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.