miRNA display CGI


Results 41 - 60 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 149358 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 149238 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 148825 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 147450 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 147226 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 146956 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 146727 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 146611 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 146289 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 146169 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 145756 0.68 0.584176
Target:  5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3'
miRNA:   3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 144381 0.67 0.670464
Target:  5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3'
miRNA:   3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 144157 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 143887 0.68 0.573711
Target:  5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3'
miRNA:   3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5'
33571 5' -62.2 NC_007605.1 + 143659 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 143542 0.68 0.590855
Target:  5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3'
miRNA:   3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 143220 0.66 0.689512
Target:  5'- gGGACauccUGGGCUcuGaaGcCCGGGGAAGGg -3'
miRNA:   3'- -UCUGc---GCCCGG--UggCaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 143100 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 143036 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5'
33571 5' -62.2 NC_007605.1 + 142934 0.66 0.727043
Target:  5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3'
miRNA:   3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.