Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 39438 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38439 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38564 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38689 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38814 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38938 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39063 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39188 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 39313 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38314 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 60935 | 0.73 | 0.337258 |
Target: 5'- aGGACgGCGGGCC-CgGgucagcUCgGGGGAAGGg -3' miRNA: 3'- -UCUG-CGCCCGGuGgC------AGgCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 34248 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 63058 | 0.78 | 0.159465 |
Target: 5'- uGGCGCgcaGGGCUGCUGgccCCGGGGGAGGu -3' miRNA: 3'- uCUGCG---CCCGGUGGCa--GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 12766 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 15835 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 18904 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 21972 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 25041 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 28110 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 31179 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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