miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 21972 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 18904 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 15835 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 12766 0.73 0.336546
Target:  5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3'
miRNA:   3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 63058 0.78 0.159465
Target:  5'- uGGCGCgcaGGGCUGCUGgccCCGGGGGAGGu -3'
miRNA:   3'- uCUGCG---CCCGGUGGCa--GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 38689 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 38814 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 160156 0.7 0.455948
Target:  5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3'
miRNA:   3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 6993 0.71 0.422905
Target:  5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 54535 0.71 0.422077
Target:  5'- gGGugGCGGGCCAagcguCCaGUCUGGccaGAGGGc -3'
miRNA:   3'- -UCugCGCCCGGU-----GG-CAGGCCc--CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 153899 0.71 0.39769
Target:  5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3'
miRNA:   3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 63584 0.72 0.381944
Target:  5'- uGGACGCGuGGCUcuCCGgcggcgCCGGGGguGGc -3'
miRNA:   3'- -UCUGCGC-CCGGu-GGCa-----GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 57583 0.72 0.359115
Target:  5'- uGGugGUggGGGCUGCUGcugcagUCGGGGAAGGg -3'
miRNA:   3'- -UCugCG--CCCGGUGGCa-----GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 39688 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39563 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39438 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39313 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39188 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39063 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 38938 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.