miRNA display CGI


Results 61 - 80 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 40255 0.69 0.50934
Target:  5'- cAGcCGCGGcccagcgcGCC-CCGUUcaCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC--------CGGuGGCAG--GCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 74244 0.69 0.527724
Target:  5'- cGGCGUGaGGCCGCgcaGgaaGGGGAAGGc -3'
miRNA:   3'- uCUGCGC-CCGGUGg--CaggCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 112346 0.69 0.537009
Target:  5'- cGGGCcucguGCcaGGGCCugUuGUCCuGGGGGAGGa -3'
miRNA:   3'- -UCUG-----CG--CCCGGugG-CAGG-CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 161766 0.69 0.537009
Target:  5'- -cGCGCuGGCC-CCG-CUGGGGAcAGGg -3'
miRNA:   3'- ucUGCGcCCGGuGGCaGGCCCCU-UCC- -5'
33571 5' -62.2 NC_007605.1 + 59674 0.68 0.565181
Target:  5'- uGGCGgGGGCguUUGUCCcacGGGuGAGGGg -3'
miRNA:   3'- uCUGCgCCCGguGGCAGG---CCC-CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 58065 0.68 0.565181
Target:  5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcgGAGGc -3'
miRNA:   3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5'
33571 5' -62.2 NC_007605.1 + 58110 0.68 0.565181
Target:  5'- cGGAgGCcgGGGCCGCgGaggCCGGGGccgcaGAGGc -3'
miRNA:   3'- -UCUgCG--CCCGGUGgCa--GGCCCC-----UUCC- -5'
33571 5' -62.2 NC_007605.1 + 124986 0.68 0.592766
Target:  5'- gAGA-GCaGGucggcauCCACCGUCagauaGGGGAAGGg -3'
miRNA:   3'- -UCUgCGcCC-------GGUGGCAGg----CCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 3649 0.7 0.482287
Target:  5'- aGGACGCGuGGCacaGCaGcCCGGGGuAGGu -3'
miRNA:   3'- -UCUGCGC-CCGg--UGgCaGGCCCCuUCC- -5'
33571 5' -62.2 NC_007605.1 + 136768 0.7 0.455948
Target:  5'- aAGGCgGgGGGCUAUUc-CCGGGGGAGGa -3'
miRNA:   3'- -UCUG-CgCCCGGUGGcaGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 39563 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 39688 0.72 0.351721
Target:  5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3'
miRNA:   3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5'
33571 5' -62.2 NC_007605.1 + 57583 0.72 0.359115
Target:  5'- uGGugGUggGGGCUGCUGcugcagUCGGGGAAGGg -3'
miRNA:   3'- -UCugCG--CCCGGUGGCa-----GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 63584 0.72 0.381944
Target:  5'- uGGACGCGuGGCUcuCCGgcggcgCCGGGGguGGc -3'
miRNA:   3'- -UCUGCGC-CCGGu-GGCa-----GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 153899 0.71 0.39769
Target:  5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3'
miRNA:   3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 54535 0.71 0.422077
Target:  5'- gGGugGCGGGCCAagcguCCaGUCUGGccaGAGGGc -3'
miRNA:   3'- -UCugCGCCCGGU-----GG-CAGGCCc--CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 6993 0.71 0.422905
Target:  5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3'
miRNA:   3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 160156 0.7 0.455948
Target:  5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3'
miRNA:   3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 158445 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 137521 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.