miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33571 5' -62.2 NC_007605.1 + 168934 0.79 0.144502
Target:  5'- uGGCGcCGGGCCGCCGcccuggcaucugcUCCGGGGccGGu -3'
miRNA:   3'- uCUGC-GCCCGGUGGC-------------AGGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 144157 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 150295 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 158445 0.66 0.717749
Target:  5'- gGGAUcCGGGCCACUcggGUCUcgguGGGGcuGGa -3'
miRNA:   3'- -UCUGcGCCCGGUGG---CAGG----CCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 146727 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 149796 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 155934 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 159003 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 107082 0.71 0.438826
Target:  5'- aGGGCGUGGaGCagcaCACCGUCUGGGaGGuuAGGu -3'
miRNA:   3'- -UCUGCGCC-CG----GUGGCAGGCCC-CU--UCC- -5'
33571 5' -62.2 NC_007605.1 + 141088 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 34574 0.69 0.500248
Target:  5'- gGGcuuCGgGGGCCugUGUgcCCGGGGguGGa -3'
miRNA:   3'- -UCu--GCgCCCGGugGCA--GGCCCCuuCC- -5'
33571 5' -62.2 NC_007605.1 + 20512 0.72 0.389765
Target:  5'- gGGGCaCGGGCCGCCGa--GGGGcAGGc -3'
miRNA:   3'- -UCUGcGCCCGGUGGCaggCCCCuUCC- -5'
33571 5' -62.2 NC_007605.1 + 137521 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 21002 0.69 0.536078
Target:  5'- cGACGUucugcuggagcccGGGCCGCCcaCCGcccGGGAGGGc -3'
miRNA:   3'- uCUGCG-------------CCCGGUGGcaGGC---CCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 140590 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 65674 0.72 0.351721
Target:  5'- cGACG-GGGCCACCGgCCGuGGuGGGGa -3'
miRNA:   3'- uCUGCgCCCGGUGGCaGGC-CCcUUCC- -5'
33571 5' -62.2 NC_007605.1 + 138019 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 147226 0.68 0.555742
Target:  5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3'
miRNA:   3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5'
33571 5' -62.2 NC_007605.1 + 143659 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5'
33571 5' -62.2 NC_007605.1 + 152865 0.76 0.211541
Target:  5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3'
miRNA:   3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.