Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 108858 | 0.68 | 0.584176 |
Target: 5'- uGACGCGucaguuGCUGCUGUCUGGGGAc-- -3' miRNA: 3'- uCUGCGCc-----CGGUGGCAGGCCCCUucc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 144157 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140590 | 0.76 | 0.211541 |
Target: 5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3' miRNA: 3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 149680 | 0.68 | 0.583223 |
Target: 5'- cAGGCGCgGGGCCggucggcuggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG-------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 137521 | 0.76 | 0.211541 |
Target: 5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3' miRNA: 3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141312 | 0.67 | 0.670464 |
Target: 5'- gGGACGgaggGGGCCugaaGcCCGGGGAcuAGGg -3' miRNA: 3'- -UCUGCg---CCCGGugg-CaGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 146727 | 0.76 | 0.211541 |
Target: 5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3' miRNA: 3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 17348 | 0.67 | 0.632095 |
Target: 5'- cAGGCuaGCcGGCCugCGcCCGGGaGAAGa -3' miRNA: 3'- -UCUG--CGcCCGGugGCaGGCCC-CUUCc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 86372 | 0.68 | 0.593722 |
Target: 5'- uGGGCGCcccccgaGGCCuCUG-CCGGGGAAcGGg -3' miRNA: 3'- -UCUGCGc------CCGGuGGCaGGCCCCUU-CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143542 | 0.68 | 0.590855 |
Target: 5'- cAGGCGCgGGGCCggucggcucggcugGCCGagacCCGGGucuGggGGg -3' miRNA: 3'- -UCUGCG-CCCGG--------------UGGCa---GGCCC---CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 66709 | 0.68 | 0.587991 |
Target: 5'- gGGAUGUGauggguggagaGGCCACCGUggcccgcagacacauUCGGGuGAAGGc -3' miRNA: 3'- -UCUGCGC-----------CCGGUGGCA---------------GGCCC-CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 148825 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 136550 | 0.68 | 0.584176 |
Target: 5'- gGGugGacagaGGGCCuguccACCGU--GGGGAGGGg -3' miRNA: 3'- -UCugCg----CCCGG-----UGGCAggCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153094 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 143887 | 0.68 | 0.573711 |
Target: 5'- cGGGCGCcuccucgGGGCCAgCUG-CCGGGGGGc- -3' miRNA: 3'- -UCUGCG-------CCCGGU-GGCaGGCCCCUUcc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 159502 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 150295 | 0.68 | 0.555742 |
Target: 5'- gGGGCagGCGGcCCuACUGgggaCCGGGGGAGGa -3' miRNA: 3'- -UCUG--CGCCcGG-UGGCa---GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 21002 | 0.69 | 0.536078 |
Target: 5'- cGACGUucugcuggagcccGGGCCGCCcaCCGcccGGGAGGGc -3' miRNA: 3'- uCUGCG-------------CCCGGUGGcaGGC---CCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 107082 | 0.71 | 0.438826 |
Target: 5'- aGGGCGUGGaGCagcaCACCGUCUGGGaGGuuAGGu -3' miRNA: 3'- -UCUGCGCC-CG----GUGGCAGGCCC-CU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 155934 | 0.76 | 0.211541 |
Target: 5'- gGGGCugaGGGCgACCGUCCGGGcccGGAGGg -3' miRNA: 3'- -UCUGcg-CCCGgUGGCAGGCCC---CUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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