Results 81 - 100 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33571 | 5' | -62.2 | NC_007605.1 | + | 49470 | 0.66 | 0.698976 |
Target: 5'- cAGGCuCaGGCCGCCGcaUCCGcuGGGAccGGGg -3' miRNA: 3'- -UCUGcGcCCGGUGGC--AGGC--CCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 121257 | 0.66 | 0.698976 |
Target: 5'- gAGGCcCGGGaCgGCCGUCUGGcgauaGGAGGa -3' miRNA: 3'- -UCUGcGCCC-GgUGGCAGGCCc----CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 170669 | 0.66 | 0.689512 |
Target: 5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3' miRNA: 3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 171207 | 0.66 | 0.689512 |
Target: 5'- cGGugGauGGCgGCgGacguUCCGGGGAucGGGg -3' miRNA: 3'- -UCugCgcCCGgUGgC----AGGCCCCU--UCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 25041 | 0.73 | 0.336546 |
Target: 5'- uGGCGCcuccucgGGGCCAgCCG-CCGGGGuuGGu -3' miRNA: 3'- uCUGCG-------CCCGGU-GGCaGGCCCCuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 106605 | 0.66 | 0.727043 |
Target: 5'- uGACGCGGGCCcugacGCUcUCCGcGGGu--- -3' miRNA: 3'- uCUGCGCCCGG-----UGGcAGGC-CCCuucc -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140794 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 3649 | 0.7 | 0.482287 |
Target: 5'- aGGACGCGuGGCacaGCaGcCCGGGGuAGGu -3' miRNA: 3'- -UCUGCGC-CCGg--UGgCaGGCCCCuUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 136768 | 0.7 | 0.455948 |
Target: 5'- aAGGCgGgGGGCUAUUc-CCGGGGGAGGa -3' miRNA: 3'- -UCUG-CgCCCGGUGGcaGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 160156 | 0.7 | 0.455948 |
Target: 5'- gAGACGUGGGUCcCCucugCCGuGGAAGGg -3' miRNA: 3'- -UCUGCGCCCGGuGGca--GGCcCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 54535 | 0.71 | 0.422077 |
Target: 5'- gGGugGCGGGCCAagcguCCaGUCUGGccaGAGGGc -3' miRNA: 3'- -UCugCGCCCGGU-----GG-CAGGCCc--CUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 153899 | 0.71 | 0.39769 |
Target: 5'- cGGgGUugaGGGgCGCCcaggcGUCCGGGGAGGGg -3' miRNA: 3'- uCUgCG---CCCgGUGG-----CAGGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 38439 | 0.72 | 0.351721 |
Target: 5'- gGGucCGCuGGGCCGCUGccccgcUCCGGGuGggGGg -3' miRNA: 3'- -UCu-GCG-CCCGGUGGC------AGGCCC-CuuCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141406 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141304 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 6993 | 0.71 | 0.422905 |
Target: 5'- cAG-UGCGGuGCUACCGacccgaggucaagucCCGGGGGAGGa -3' miRNA: 3'- -UCuGCGCC-CGGUGGCa--------------GGCCCCUUCC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141202 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 141100 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140998 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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33571 | 5' | -62.2 | NC_007605.1 | + | 140896 | 0.66 | 0.727043 |
Target: 5'- gGGugGCcGGCUgcaGCCGggUCCGGGGuuccGGc -3' miRNA: 3'- -UCugCGcCCGG---UGGC--AGGCCCCuu--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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