miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33576 5' -55.1 NC_007605.1 + 101390 0.66 0.93968
Target:  5'- uGUCGGAGAguaCCGGCcaguauuuggccAGGUCCCg-- -3'
miRNA:   3'- -CAGCCUCUagaGGUCG------------UCUAGGGacu -5'
33576 5' -55.1 NC_007605.1 + 103019 0.66 0.93968
Target:  5'- -aUGGAG-UCUCagcuGCAGGccUCCCUGGg -3'
miRNA:   3'- caGCCUCuAGAGgu--CGUCU--AGGGACU- -5'
33576 5' -55.1 NC_007605.1 + 67846 0.66 0.924423
Target:  5'- cUCGGAG---UCCAGCAGAcUCCgaGGa -3'
miRNA:   3'- cAGCCUCuagAGGUCGUCU-AGGgaCU- -5'
33576 5' -55.1 NC_007605.1 + 124373 0.68 0.880494
Target:  5'- --aGGAGugCUCCAGCAGAUgCCUc- -3'
miRNA:   3'- cagCCUCuaGAGGUCGUCUAgGGAcu -5'
33576 5' -55.1 NC_007605.1 + 57646 0.68 0.858265
Target:  5'- cUCGGAGAUCaUCCcacugggacgGGguGGUgCCUGGu -3'
miRNA:   3'- cAGCCUCUAG-AGG----------UCguCUAgGGACU- -5'
33576 5' -55.1 NC_007605.1 + 140258 0.69 0.842409
Target:  5'- cGUUGGGGGUCUCgGGUAGG-CCaUGAu -3'
miRNA:   3'- -CAGCCUCUAGAGgUCGUCUaGGgACU- -5'
33576 5' -55.1 NC_007605.1 + 65071 0.69 0.817203
Target:  5'- uGUgGGcGGGUCUCCAuCAaGUCCCUGAu -3'
miRNA:   3'- -CAgCC-UCUAGAGGUcGUcUAGGGACU- -5'
33576 5' -55.1 NC_007605.1 + 102225 0.69 0.808452
Target:  5'- -gCaGAGAUggCCAGCAGAUCCCa-- -3'
miRNA:   3'- caGcCUCUAgaGGUCGUCUAGGGacu -5'
33576 5' -55.1 NC_007605.1 + 157499 0.7 0.799541
Target:  5'- aGUCGGAGugguaagCUCCGuCAGGUUCUUGAc -3'
miRNA:   3'- -CAGCCUCua-----GAGGUcGUCUAGGGACU- -5'
33576 5' -55.1 NC_007605.1 + 37967 0.7 0.790477
Target:  5'- -cUGGAGGUCU--GGCAGGUgCCUGAc -3'
miRNA:   3'- caGCCUCUAGAggUCGUCUAgGGACU- -5'
33576 5' -55.1 NC_007605.1 + 161297 0.72 0.673135
Target:  5'- -cCGGGGGcCUgCAGCAGGUUCCUGu -3'
miRNA:   3'- caGCCUCUaGAgGUCGUCUAGGGACu -5'
33576 5' -55.1 NC_007605.1 + 43842 0.73 0.6219
Target:  5'- -aCGGGGAUCUCCAGaauAUCCCgGAu -3'
miRNA:   3'- caGCCUCUAGAGGUCgucUAGGGaCU- -5'
33576 5' -55.1 NC_007605.1 + 69357 0.73 0.6219
Target:  5'- --gGGAGAUCaUUCGGUGGcAUCCCUGAa -3'
miRNA:   3'- cagCCUCUAG-AGGUCGUC-UAGGGACU- -5'
33576 5' -55.1 NC_007605.1 + 54952 0.74 0.550686
Target:  5'- gGUgGGAGGUCUCUuugAGCAGGaggUCUCUGAg -3'
miRNA:   3'- -CAgCCUCUAGAGG---UCGUCU---AGGGACU- -5'
33576 5' -55.1 NC_007605.1 + 122437 1.09 0.00387
Target:  5'- gGUCGGAGAUCUCCAGCAGAUCCCUGAg -3'
miRNA:   3'- -CAGCCUCUAGAGGUCGUCUAGGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.