miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33578 3' -62.2 NC_007605.1 + 154797 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 136384 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 148660 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 139453 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 151728 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 145591 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 157866 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 142522 0.66 0.702919
Target:  5'- gGGgGCGCcCgggggUCGGGCugGGCCGCc -3'
miRNA:   3'- -UCgUGCGaGagg--GGCCUGugCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 1993 0.66 0.700064
Target:  5'- cGCGCGCcCcccgacccccccgaUCCCCGGA-ACGuccGCCGCc -3'
miRNA:   3'- uCGUGCGaG--------------AGGGGCCUgUGC---CGGCG- -5'
33578 3' -62.2 NC_007605.1 + 21179 0.66 0.697204
Target:  5'- cGGCACGCccUCUCUcuggggguuuacauuCCaGGAgGCGGCgUGCg -3'
miRNA:   3'- -UCGUGCG--AGAGG---------------GG-CCUgUGCCG-GCG- -5'
33578 3' -62.2 NC_007605.1 + 54901 0.66 0.693384
Target:  5'- gAGCugGgaCcccacugaccuUCCCCGGACgguGGcCCGCg -3'
miRNA:   3'- -UCGugCgaG-----------AGGGGCCUGug-CC-GGCG- -5'
33578 3' -62.2 NC_007605.1 + 85548 0.66 0.693384
Target:  5'- gGGCAaggggGUUC-CCCaaCGGcCAUGGCCGCc -3'
miRNA:   3'- -UCGUg----CGAGaGGG--GCCuGUGCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 67720 0.66 0.683804
Target:  5'- cAGCuucgaGgUCUCCCCuGACGCuguGGCCGa -3'
miRNA:   3'- -UCGug---CgAGAGGGGcCUGUG---CCGGCg -5'
33578 3' -62.2 NC_007605.1 + 3058 0.66 0.683804
Target:  5'- cGCGCGC-C-CCCCGGGCcccaGuGCUGUg -3'
miRNA:   3'- uCGUGCGaGaGGGGCCUGug--C-CGGCG- -5'
33578 3' -62.2 NC_007605.1 + 4856 0.66 0.683804
Target:  5'- uGCuAUGCg--CCCCGGGCACcaggGGCCa- -3'
miRNA:   3'- uCG-UGCGagaGGGGCCUGUG----CCGGcg -5'
33578 3' -62.2 NC_007605.1 + 19894 0.66 0.683804
Target:  5'- cGC-UGCUCUUCCUGGGugaGGCCGg -3'
miRNA:   3'- uCGuGCGAGAGGGGCCUgugCCGGCg -5'
33578 3' -62.2 NC_007605.1 + 22188 0.66 0.683804
Target:  5'- gGGCuACGUccgagUCUCCgUGGACAC-GCCGg -3'
miRNA:   3'- -UCG-UGCG-----AGAGGgGCCUGUGcCGGCg -5'
33578 3' -62.2 NC_007605.1 + 35140 0.66 0.683804
Target:  5'- gGGCGacCGCUCcggCCCCaGGACcguaggaaggcGCGGUgGCu -3'
miRNA:   3'- -UCGU--GCGAGa--GGGG-CCUG-----------UGCCGgCG- -5'
33578 3' -62.2 NC_007605.1 + 108471 0.66 0.668399
Target:  5'- gAGCugGCguguaucagaaagUCCCCaaaGACugGCGGCCGCc -3'
miRNA:   3'- -UCGugCGag-----------AGGGGc--CUG--UGCCGGCG- -5'
33578 3' -62.2 NC_007605.1 + 87971 0.66 0.664536
Target:  5'- gAGCGacaGCUC-CCCCaGucCAcCGGCCGUa -3'
miRNA:   3'- -UCGUg--CGAGaGGGGcCu-GU-GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.