miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33579 5' -61.6 NC_007605.1 + 9357 0.66 0.709455
Target:  5'- uACCgCUCA-CUGCUGACcaucCUGCAGGa -3'
miRNA:   3'- -UGGgGAGUcGGCGACUGac--GGCGUCC- -5'
33579 5' -61.6 NC_007605.1 + 167296 0.66 0.709455
Target:  5'- cGCUCUUgacCAGCUGCUgGACUGCC-CGGa -3'
miRNA:   3'- -UGGGGA---GUCGGCGA-CUGACGGcGUCc -5'
33579 5' -61.6 NC_007605.1 + 38781 0.66 0.709455
Target:  5'- cGCCaagaCUUccaGGCC-CUGACUGCCcagcacggggggGCAGGa -3'
miRNA:   3'- -UGGg---GAG---UCGGcGACUGACGG------------CGUCC- -5'
33579 5' -61.6 NC_007605.1 + 70611 0.66 0.699839
Target:  5'- aACCCCagGGCCGCgaccuacgugGACgugGcCCGCAacuGGg -3'
miRNA:   3'- -UGGGGagUCGGCGa---------CUGa--C-GGCGU---CC- -5'
33579 5' -61.6 NC_007605.1 + 63030 0.66 0.699839
Target:  5'- gGCCuCCUCgcugagugcggcGGCCGuCUGGCg--CGCAGGg -3'
miRNA:   3'- -UGG-GGAG------------UCGGC-GACUGacgGCGUCC- -5'
33579 5' -61.6 NC_007605.1 + 94462 0.66 0.699839
Target:  5'- gGCCUCUCuGGCUguGCUGacccuucuGCUGCUGCuGGu -3'
miRNA:   3'- -UGGGGAG-UCGG--CGAC--------UGACGGCGuCC- -5'
33579 5' -61.6 NC_007605.1 + 83813 0.66 0.690171
Target:  5'- gGCCCCgCGGCaGgaGGCccGCgGCAGGa -3'
miRNA:   3'- -UGGGGaGUCGgCgaCUGa-CGgCGUCC- -5'
33579 5' -61.6 NC_007605.1 + 51848 0.66 0.690171
Target:  5'- cACCguCC-CGGCgGCUG-CUGCCGUcccAGGg -3'
miRNA:   3'- -UGG--GGaGUCGgCGACuGACGGCG---UCC- -5'
33579 5' -61.6 NC_007605.1 + 81493 0.66 0.690171
Target:  5'- gGCCCUgggAGCCauccCUGACacagGCUGCGGGg -3'
miRNA:   3'- -UGGGGag-UCGGc---GACUGa---CGGCGUCC- -5'
33579 5' -61.6 NC_007605.1 + 132586 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 133085 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 131961 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 132211 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 63351 0.66 0.680458
Target:  5'- gGCCcaggaCCUUGGCCGgUGGCUGUggacuggggUGCGGGu -3'
miRNA:   3'- -UGG-----GGAGUCGGCgACUGACG---------GCGUCC- -5'
33579 5' -61.6 NC_007605.1 + 132461 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 133335 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 62842 0.66 0.680458
Target:  5'- uGCCCCUCcgcuaccGCCGCUG-CUGUCacucucauaGCGGa -3'
miRNA:   3'- -UGGGGAGu------CGGCGACuGACGG---------CGUCc -5'
33579 5' -61.6 NC_007605.1 + 133210 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 132336 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
33579 5' -61.6 NC_007605.1 + 132835 0.66 0.680458
Target:  5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3'
miRNA:   3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.