Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33579 | 5' | -61.6 | NC_007605.1 | + | 9357 | 0.66 | 0.709455 |
Target: 5'- uACCgCUCA-CUGCUGACcaucCUGCAGGa -3' miRNA: 3'- -UGGgGAGUcGGCGACUGac--GGCGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 167296 | 0.66 | 0.709455 |
Target: 5'- cGCUCUUgacCAGCUGCUgGACUGCC-CGGa -3' miRNA: 3'- -UGGGGA---GUCGGCGA-CUGACGGcGUCc -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 38781 | 0.66 | 0.709455 |
Target: 5'- cGCCaagaCUUccaGGCC-CUGACUGCCcagcacggggggGCAGGa -3' miRNA: 3'- -UGGg---GAG---UCGGcGACUGACGG------------CGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 70611 | 0.66 | 0.699839 |
Target: 5'- aACCCCagGGCCGCgaccuacgugGACgugGcCCGCAacuGGg -3' miRNA: 3'- -UGGGGagUCGGCGa---------CUGa--C-GGCGU---CC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 63030 | 0.66 | 0.699839 |
Target: 5'- gGCCuCCUCgcugagugcggcGGCCGuCUGGCg--CGCAGGg -3' miRNA: 3'- -UGG-GGAG------------UCGGC-GACUGacgGCGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 94462 | 0.66 | 0.699839 |
Target: 5'- gGCCUCUCuGGCUguGCUGacccuucuGCUGCUGCuGGu -3' miRNA: 3'- -UGGGGAG-UCGG--CGAC--------UGACGGCGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 83813 | 0.66 | 0.690171 |
Target: 5'- gGCCCCgCGGCaGgaGGCccGCgGCAGGa -3' miRNA: 3'- -UGGGGaGUCGgCgaCUGa-CGgCGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 51848 | 0.66 | 0.690171 |
Target: 5'- cACCguCC-CGGCgGCUG-CUGCCGUcccAGGg -3' miRNA: 3'- -UGG--GGaGUCGgCGACuGACGGCG---UCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 81493 | 0.66 | 0.690171 |
Target: 5'- gGCCCUgggAGCCauccCUGACacagGCUGCGGGg -3' miRNA: 3'- -UGGGGag-UCGGc---GACUGa---CGGCGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 132586 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 133085 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 131961 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 132211 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 63351 | 0.66 | 0.680458 |
Target: 5'- gGCCcaggaCCUUGGCCGgUGGCUGUggacuggggUGCGGGu -3' miRNA: 3'- -UGG-----GGAGUCGGCgACUGACG---------GCGUCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 132461 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 133335 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 62842 | 0.66 | 0.680458 |
Target: 5'- uGCCCCUCcgcuaccGCCGCUG-CUGUCacucucauaGCGGa -3' miRNA: 3'- -UGGGGAGu------CGGCGACuGACGG---------CGUCc -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 133210 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 132336 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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33579 | 5' | -61.6 | NC_007605.1 | + | 132835 | 0.66 | 0.680458 |
Target: 5'- gACCCaccggCGGCCGCccGGCUGCCcCcGGa -3' miRNA: 3'- -UGGGga---GUCGGCGa-CUGACGGcGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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