miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33580 3' -59.8 NC_007605.1 + 12574 0.66 0.776106
Target:  5'- cGCCGCAGguacgcugcCCCACcagaaggcauuCCugACUUCCCuGAu -3'
miRNA:   3'- uUGGCGUC---------GGGUG-----------GGugUGAAGGG-CU- -5'
33580 3' -59.8 NC_007605.1 + 148547 0.66 0.776106
Target:  5'- uGCUGCAGCCCAUUCGC-CcUCUgGGg -3'
miRNA:   3'- uUGGCGUCGGGUGGGUGuGaAGGgCU- -5'
33580 3' -59.8 NC_007605.1 + 62938 0.66 0.776106
Target:  5'- gGGCUGCuGCCCccuccgGCCCGgcgucuaaaUAUUUCCCGGg -3'
miRNA:   3'- -UUGGCGuCGGG------UGGGU---------GUGAAGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 67106 0.66 0.766931
Target:  5'- gAGCUGCu-CCaCACCCGCGCUgccUCCCu- -3'
miRNA:   3'- -UUGGCGucGG-GUGGGUGUGA---AGGGcu -5'
33580 3' -59.8 NC_007605.1 + 109451 0.66 0.766931
Target:  5'- cACCGCAGgCCAaaggCCACAggUCCCc- -3'
miRNA:   3'- uUGGCGUCgGGUg---GGUGUgaAGGGcu -5'
33580 3' -59.8 NC_007605.1 + 45578 0.66 0.766931
Target:  5'- -uCCGUcuGCCCuCCCugGCUUCUgGAc -3'
miRNA:   3'- uuGGCGu-CGGGuGGGugUGAAGGgCU- -5'
33580 3' -59.8 NC_007605.1 + 12233 0.66 0.764156
Target:  5'- aAGCUGCAGUCCugCCugGCgcaacagagcgagacCCUGAc -3'
miRNA:   3'- -UUGGCGUCGGGugGGugUGaa-------------GGGCU- -5'
33580 3' -59.8 NC_007605.1 + 129985 0.66 0.764156
Target:  5'- uACUGCcuGCCCACCCggagaccugcaucuGCACacCCCGGu -3'
miRNA:   3'- uUGGCGu-CGGGUGGG--------------UGUGaaGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 160644 0.66 0.757642
Target:  5'- cACCGCAGCCaCGUCCAgACU-CCgGGg -3'
miRNA:   3'- uUGGCGUCGG-GUGGGUgUGAaGGgCU- -5'
33580 3' -59.8 NC_007605.1 + 114145 0.66 0.748247
Target:  5'- cAGCaGCAGCCCACgCCAUcaGCcgcCCCGGc -3'
miRNA:   3'- -UUGgCGUCGGGUG-GGUG--UGaa-GGGCU- -5'
33580 3' -59.8 NC_007605.1 + 9321 0.66 0.748247
Target:  5'- --gCGCAGCCCGCCUGCcccauCUUCaCCc- -3'
miRNA:   3'- uugGCGUCGGGUGGGUGu----GAAG-GGcu -5'
33580 3' -59.8 NC_007605.1 + 104916 0.66 0.748247
Target:  5'- cACgGUGGCcucuCCACCCAuCACaUCCCGGu -3'
miRNA:   3'- uUGgCGUCG----GGUGGGU-GUGaAGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 66554 0.66 0.748247
Target:  5'- aGAgCGCGGCCCccgggguuuGCCCAacucuuauuCUUCCCGu -3'
miRNA:   3'- -UUgGCGUCGGG---------UGGGUgu-------GAAGGGCu -5'
33580 3' -59.8 NC_007605.1 + 111881 0.66 0.748247
Target:  5'- -cUCGCcGCCUuuGCUCGCACggCCCGGg -3'
miRNA:   3'- uuGGCGuCGGG--UGGGUGUGaaGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 153689 0.66 0.738755
Target:  5'- -uCCGCAGCaCC-CCCACAUaUCUCu- -3'
miRNA:   3'- uuGGCGUCG-GGuGGGUGUGaAGGGcu -5'
33580 3' -59.8 NC_007605.1 + 103028 0.66 0.738755
Target:  5'- cAGCUGCAGgCCuCCCugGg-UCCCGGc -3'
miRNA:   3'- -UUGGCGUCgGGuGGGugUgaAGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 1443 0.66 0.738755
Target:  5'- uGGCUGC-GCCCGCgCgGCGCccCCCGAc -3'
miRNA:   3'- -UUGGCGuCGGGUG-GgUGUGaaGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 383 0.66 0.738755
Target:  5'- uGGCUGC-GCCCGCgCgGCGCccCCCGAc -3'
miRNA:   3'- -UUGGCGuCGGGUG-GgUGUGaaGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 921 0.66 0.738755
Target:  5'- uGGCUGC-GCCCGCgCgGCGCccCCCGAc -3'
miRNA:   3'- -UUGGCGuCGGGUG-GgUGUGaaGGGCU- -5'
33580 3' -59.8 NC_007605.1 + 20571 0.66 0.733016
Target:  5'- gGGCCGCcugAGCCCauccucGCCCACAUcgcucucccuggcuuUUCCCu- -3'
miRNA:   3'- -UUGGCG---UCGGG------UGGGUGUG---------------AAGGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.