miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33580 5' -44.9 NC_007605.1 + 147677 0.65 0.999999
Target:  5'- cCUUCUAcggacucGUCuGGguucuuggccccucUGGUaGGACugGGCg -3'
miRNA:   3'- -GAAGAU-------UAGuUU--------------ACCAaCCUGugCCG- -5'
33580 5' -44.9 NC_007605.1 + 16483 0.66 0.999999
Target:  5'- -cUCUGGUCGAcagGGgaGGAgGCcgGGCg -3'
miRNA:   3'- gaAGAUUAGUUua-CCaaCCUgUG--CCG- -5'
33580 5' -44.9 NC_007605.1 + 36100 0.66 0.999998
Target:  5'- --cCUGAaCcuGUGGUUGGGCA-GGUa -3'
miRNA:   3'- gaaGAUUaGuuUACCAACCUGUgCCG- -5'
33580 5' -44.9 NC_007605.1 + 90411 0.66 0.999998
Target:  5'- -cUCUGGUCu--UGGUUucGGAacagGCGGCc -3'
miRNA:   3'- gaAGAUUAGuuuACCAA--CCUg---UGCCG- -5'
33580 5' -44.9 NC_007605.1 + 84179 0.66 0.999998
Target:  5'- ----gGGUCGGGUGGgcGGGCuccACGGUc -3'
miRNA:   3'- gaagaUUAGUUUACCaaCCUG---UGCCG- -5'
33580 5' -44.9 NC_007605.1 + 45904 0.66 0.999998
Target:  5'- ---gUGGUgGugaGGUUGGugGCGGCc -3'
miRNA:   3'- gaagAUUAgUuuaCCAACCugUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 45049 0.66 0.999998
Target:  5'- -aUCUAgaGUCGAGUuccaGUUuGACACGGCc -3'
miRNA:   3'- gaAGAU--UAGUUUAc---CAAcCUGUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 47134 0.67 0.999997
Target:  5'- -gUCUGGUCAAGUcga-GGAUACGGg -3'
miRNA:   3'- gaAGAUUAGUUUAccaaCCUGUGCCg -5'
33580 5' -44.9 NC_007605.1 + 59218 0.67 0.999995
Target:  5'- cCUUCUGGUCcgg-GGUcuuACGCGGCu -3'
miRNA:   3'- -GAAGAUUAGuuuaCCAaccUGUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 158334 0.67 0.999995
Target:  5'- aCUUCUccUCGugccGGUUGGuCACGGa -3'
miRNA:   3'- -GAAGAuuAGUuua-CCAACCuGUGCCg -5'
33580 5' -44.9 NC_007605.1 + 165469 0.67 0.999995
Target:  5'- aCUUCUGu---AGUGcGggGGAUAUGGCc -3'
miRNA:   3'- -GAAGAUuaguUUAC-CaaCCUGUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 61231 0.67 0.999986
Target:  5'- cCUUUUGAgCAAGUGcuacaucuugaGggGGGCugGGCa -3'
miRNA:   3'- -GAAGAUUaGUUUAC-----------CaaCCUGugCCG- -5'
33580 5' -44.9 NC_007605.1 + 107433 0.67 0.999986
Target:  5'- gCUUUUAcUUu-AUGGUgggGGACAUGGUg -3'
miRNA:   3'- -GAAGAUuAGuuUACCAa--CCUGUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 57847 0.68 0.99998
Target:  5'- --gCUGAUCAuccucugugucAGUGGUggaGGACagaggggGCGGCg -3'
miRNA:   3'- gaaGAUUAGU-----------UUACCAa--CCUG-------UGCCG- -5'
33580 5' -44.9 NC_007605.1 + 71113 0.68 0.999974
Target:  5'- -cUCUAggGUCAGAgaGGccaggGGGCugGGCa -3'
miRNA:   3'- gaAGAU--UAGUUUa-CCaa---CCUGugCCG- -5'
33580 5' -44.9 NC_007605.1 + 91327 0.69 0.999913
Target:  5'- ----gGGUCAAGUGGcugGGGCACcggGGCu -3'
miRNA:   3'- gaagaUUAGUUUACCaa-CCUGUG---CCG- -5'
33580 5' -44.9 NC_007605.1 + 31890 0.69 0.999886
Target:  5'- --cCUGuUCAAcgugGUGGUUGGACauGCGGa -3'
miRNA:   3'- gaaGAUuAGUU----UACCAACCUG--UGCCg -5'
33580 5' -44.9 NC_007605.1 + 59837 0.69 0.999851
Target:  5'- gUUUUAAUagGGGUGGUcucUGG-CGCGGCa -3'
miRNA:   3'- gAAGAUUAg-UUUACCA---ACCuGUGCCG- -5'
33580 5' -44.9 NC_007605.1 + 50441 0.7 0.999752
Target:  5'- -cUUUAAUU--GUGGgggUGGGCAgGGCa -3'
miRNA:   3'- gaAGAUUAGuuUACCa--ACCUGUgCCG- -5'
33580 5' -44.9 NC_007605.1 + 51679 0.71 0.999033
Target:  5'- ---aUGAaCAAGUGGcggUGGAaCACGGCa -3'
miRNA:   3'- gaagAUUaGUUUACCa--ACCU-GUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.