miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 133689 0.66 0.691613
Target:  5'- uGCCCuGAuccuCUcGGUGGCCUaCCUGCu -3'
miRNA:   3'- -CGGGcCUcu--GA-CCACCGGGaGGACGc -5'
33581 3' -62.4 NC_007605.1 + 17865 0.66 0.691613
Target:  5'- aCCCGGAGcCUGuuuGUGGCCCccaucucCCUGg- -3'
miRNA:   3'- cGGGCCUCuGAC---CACCGGGa------GGACgc -5'
33581 3' -62.4 NC_007605.1 + 121035 0.66 0.682019
Target:  5'- uGCCCgggaGGAGGCUGaGagugcggGGaaugCCUCCUGCa -3'
miRNA:   3'- -CGGG----CCUCUGAC-Ca------CCg---GGAGGACGc -5'
33581 3' -62.4 NC_007605.1 + 152465 0.66 0.682019
Target:  5'- aCCCGGGGGCcaUGGUGGagagcaUCUUGCu -3'
miRNA:   3'- cGGGCCUCUG--ACCACCggg---AGGACGc -5'
33581 3' -62.4 NC_007605.1 + 11325 0.66 0.682019
Target:  5'- gGgCUGGAGAgcCUGGaacgGGCCCUggaUCUGCu -3'
miRNA:   3'- -CgGGCCUCU--GACCa---CCGGGA---GGACGc -5'
33581 3' -62.4 NC_007605.1 + 39967 0.66 0.682019
Target:  5'- cGgCUGGGGGCUGG-GGucccgggacgccCCCUcCCUGCu -3'
miRNA:   3'- -CgGGCCUCUGACCaCC------------GGGA-GGACGc -5'
33581 3' -62.4 NC_007605.1 + 163910 0.66 0.682019
Target:  5'- aGCCCGcAG-UUGGggucGGgCCUCCUGUGc -3'
miRNA:   3'- -CGGGCcUCuGACCa---CCgGGAGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 140834 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142465 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 140936 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142363 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142261 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142159 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141955 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141853 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141650 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141548 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141446 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141344 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141242 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.